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使用新型序列捕获方法对临床样本中的乳腺癌和卵巢癌基因进行快速且经济高效的筛查。

Rapid and cost effective screening of breast and ovarian cancer genes using novel sequence capture method in clinical samples.

作者信息

Arvai Kristóf, Horváth Péter, Balla Bernadett, Tőkés Anna M, Tobiás Bálint, Takács István, Nagy Zsolt, Lakatos Péter, Kósa János P

机构信息

1st Department of Internal Medicine, Semmelweis University, Budapest, Hungary.

出版信息

Fam Cancer. 2014 Dec;13(4):583-9. doi: 10.1007/s10689-014-9730-7.

DOI:10.1007/s10689-014-9730-7
PMID:24853695
Abstract

BRCA1 and BRCA2 are two well-known genes in the background of hereditary breast and ovarian cancer. There is also evidence that several other genes play an important role in the pathogenesis of these two malignancies. Latest population-scaled studies showed that certain mutations in different genes could cause similar risk elevation like BRCA2 mutations. In this study we present a new method to analyse the risk assessment of women to breast and ovarian cancer. Using Haloplex, a novel sequence capture method combined with next-generation sequencing we were able to perform rapid and cost-effective screening of 16 genes that could be associated with an increased risk of breast and ovarian cancer. The rapid and cost effective analysis of this 16-gene cohort can reveal the genetic background of approximately 30 % of hereditary and familiar cases of breast and ovarian cancers. Thus, it opens up a new and high-throughput approach with fast turnaround time to the genetic diagnostics of these disorders and may be helpful to investigate other familial genetic disorders as well.

摘要

BRCA1和BRCA2是遗传性乳腺癌和卵巢癌背景下两个著名的基因。也有证据表明,其他几个基因在这两种恶性肿瘤的发病机制中起着重要作用。最新的大规模人群研究表明,不同基因中的某些突变可能导致与BRCA2突变类似的风险升高。在本研究中,我们提出了一种新的方法来分析女性患乳腺癌和卵巢癌的风险评估。使用Haloplex(一种结合了新一代测序的新型序列捕获方法),我们能够对16个可能与乳腺癌和卵巢癌风险增加相关的基因进行快速且经济高效的筛查。对这个16基因队列进行快速且经济高效的分析,可以揭示约30%的遗传性和家族性乳腺癌和卵巢癌病例的遗传背景。因此,它为这些疾病的基因诊断开辟了一种新的高通量方法,周转时间快,并且可能也有助于研究其他家族性遗传疾病。

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本文引用的文献

1
PALB2 and breast cancer: ready for clinical translation!PALB2与乳腺癌:准备好进行临床转化了!
Appl Clin Genet. 2013 Jul 19;6:43-52. doi: 10.2147/TACG.S34116. Print 2013.
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Technical and implementation issues in using next-generation sequencing of cancers in clinical practice.在临床实践中使用癌症下一代测序的技术和实施问题。
Br J Cancer. 2013 Aug 20;109(4):827-35. doi: 10.1038/bjc.2013.416. Epub 2013 Jul 25.
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CDH1 germline mutations and the hereditary diffuse gastric and lobular breast cancer syndrome: a multicentre study.
CDH1 种系突变与遗传性弥漫性胃癌和小叶乳腺癌综合征:一项多中心研究。
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Germline BRCA mutations are associated with higher risk of nodal involvement, distant metastasis, and poor survival outcomes in prostate cancer.胚系 BRCA 突变与前列腺癌中淋巴结受累、远处转移和不良生存结局的风险增加相关。
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Comprehensive analysis of BRCA1, BRCA2 and TP53 germline mutation and tumor characterization: a portrait of early-onset breast cancer in Brazil.BRCA1、BRCA2 和 TP53 种系突变与肿瘤特征的综合分析:巴西早发性乳腺癌的特征。
PLoS One. 2013;8(3):e57581. doi: 10.1371/journal.pone.0057581. Epub 2013 Mar 1.
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Risk of pancreatic cancer in breast cancer families from the breast cancer family registry.乳腺癌家族登记处中乳腺癌家族的胰腺癌发病风险。
Cancer Epidemiol Biomarkers Prev. 2013 May;22(5):803-11. doi: 10.1158/1055-9965.EPI-12-0195. Epub 2013 Mar 1.
7
Whole exome sequencing suggests much of non-BRCA1/BRCA2 familial breast cancer is due to moderate and low penetrance susceptibility alleles.全外显子组测序提示非 BRCA1/BRCA2 家族性乳腺癌的大部分归因于中度和低外显率易感等位基因。
PLoS One. 2013;8(2):e55681. doi: 10.1371/journal.pone.0055681. Epub 2013 Feb 8.
8
Nonoptical massive parallel DNA sequencing of BRCA1 and BRCA2 genes in a diagnostic setting.在诊断环境中非光学大规模平行 BRCA1 和 BRCA2 基因测序。
Hum Mutat. 2013 Apr;34(4):629-35. doi: 10.1002/humu.22272. Epub 2013 Feb 11.
9
Contribution of the PALB2 c.2323C>T [p.Q775X] founder mutation in well-defined breast and/or ovarian cancer families and unselected ovarian cancer cases of French Canadian descent.PALB2 c.2323C>T [p.Q775X] founder 突变在明确的乳腺癌和/或卵巢癌家族以及法裔加拿大血统的未选择卵巢癌病例中的贡献。
BMC Med Genet. 2013 Jan 9;14:5. doi: 10.1186/1471-2350-14-5.
10
Progress in ion torrent semiconductor chip based sequencing.基于离子激流半导体芯片测序技术的进展。
Electrophoresis. 2012 Dec;33(23):3397-417. doi: 10.1002/elps.201200424.