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4-氨基喹啉哌啶酰胺:DprE1 的非共价抑制剂,具有长驻留时间和强大的抗分枝杆菌活性。

4-aminoquinolone piperidine amides: noncovalent inhibitors of DprE1 with long residence time and potent antimycobacterial activity.

机构信息

Department of Medicinal Chemistry, ‡Department of Biosciences, and §DMPK (Drug Metabolism and Pharmacokinetics) and Animal Sciences, AstraZeneca India Pvt. Ltd. , Bellary Road, Hebbal, Bangalore 560024, India.

出版信息

J Med Chem. 2014 Jun 26;57(12):5419-34. doi: 10.1021/jm5005978. Epub 2014 Jun 11.

Abstract

4-Aminoquinolone piperidine amides (AQs) were identified as a novel scaffold starting from a whole cell screen, with potent cidality on Mycobacterium tuberculosis (Mtb). Evaluation of the minimum inhibitory concentrations, followed by whole genome sequencing of mutants raised against AQs, identified decaprenylphosphoryl-β-d-ribose 2'-epimerase (DprE1) as the primary target responsible for the antitubercular activity. Mass spectrometry and enzyme kinetic studies indicated that AQs are noncovalent, reversible inhibitors of DprE1 with slow on rates and long residence times of ∼100 min on the enzyme. In general, AQs have excellent leadlike properties and good in vitro secondary pharmacology profile. Although the scaffold started off as a single active compound with moderate potency from the whole cell screen, structure-activity relationship optimization of the scaffold led to compounds with potent DprE1 inhibition (IC50 < 10 nM) along with potent cellular activity (MIC = 60 nM) against Mtb.

摘要

4-氨基喹啉哌啶酰胺(AQs)是从全细胞筛选中鉴定出的一种新型支架,对结核分枝杆菌(Mtb)具有很强的杀菌作用。评估最小抑菌浓度后,对针对 AQs 产生的突变体进行全基因组测序,确定了脱磷酸核糖基-β-d-核糖 2'-差向异构酶(DprE1)是主要的抗结核活性靶标。质谱和酶动力学研究表明,AQs 是 DprE1 的非共价、可逆抑制剂,其与酶的结合速率较慢,停留时间较长,约为 100 分钟。总的来说,AQs 具有良好的先导化合物特性和体外次要药理学特性。虽然该支架最初是从全细胞筛选中鉴定出的一种具有中等活性的单一活性化合物,但对该支架的构效关系优化导致了具有强效 DprE1 抑制作用(IC50<10 nM)和对 Mtb 的强效细胞活性(MIC=60 nM)的化合物。

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