Suppr超能文献

共生水螅水母(刺胞动物门)功能特化息肉之间的差异基因表达。

Differential gene expression between functionally specialized polyps of the colonial hydrozoan Hydractinia symbiolongicarpus (Phylum Cnidaria).

机构信息

Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, Kansas 66045, USA.

出版信息

BMC Genomics. 2014 May 28;15(1):406. doi: 10.1186/1471-2164-15-406.

Abstract

BACKGROUND

A colony of the hydrozoan Hydractinia symbiolongicarpus comprises genetically identical yet morphologically distinct and functionally specialized polyp types. The main labor divisions are between feeding, reproduction and defense. In H. symbiolongicarpus, the feeding polyp (called a gastrozooid) has elongated tentacles and a mouth, which are absent in the reproductive polyp (gonozooid) and defensive polyp (dactylozooid). Instead, the dactylozooid has an extended body column with an abundance of stinging cells (nematocysts) and the gonozooid bears gonophores on its body column. Morphological differences between polyp types can be attributed to simple changes in their axial patterning during development, and it has long been hypothesized that these specialized polyps arose through evolutionary alterations in oral-aboral patterning of the ancestral gastrozooid.

RESULTS

An assembly of 66,508 transcripts (>200 bp) were generated using short-read Illumina RNA-Seq libraries constructed from feeding, reproductive, and defensive polyps of H. symbiolongicarpus. Using several different annotation methods, approximately 54% of the transcripts were annotated. Differential expression analyses were conducted between these three polyp types to isolate genes that may be involved in functional, histological, and pattering differences between polyp types. Nearly 7 K transcripts were differentially expressed in a polyp-specific manner, including members of the homeodomain, myosin, toxin and BMP gene families. We report the spatial expression of a subset of these polyp-specific transcripts to validate our differential expression analyses.

CONCLUSIONS

While potentially originating through simple changes in patterning, polymorphic polyps in Hydractinia are the result of differentially expressed functional, structural, and patterning genes.The differentially expressed genes identified in our study provide a starting point for future investigations of the developmental patterning and functional differences that are displayed in the different polyp types that confer a division of labor within a colony of H. symbiolongicarpus.

摘要

背景

水螅水母目水螅虫属的一个群体由遗传上相同但形态不同且功能特化的息肉类型组成。主要的劳动分工是在进食、繁殖和防御之间。在 H. symbiolongicarpus 中,进食息肉(称为胃息肉)具有细长的触须和嘴,而在繁殖息肉(生殖息肉)和防御息肉(指息肉)中则没有。相反,指息肉具有延伸的身体柱,其中有大量的刺细胞(刺丝囊),生殖息肉则在其身体柱上带有生殖器。息肉类型之间的形态差异可归因于其在发育过程中轴向模式的简单变化,长期以来一直假设这些特化息肉是通过祖先胃息肉的口-肛模式的进化改变而产生的。

结果

使用短读 Illumina RNA-Seq 文库从 H. symbiolongicarpus 的进食、繁殖和防御息肉中生成了 66508 个转录本(>200bp)。使用几种不同的注释方法,大约 54%的转录本被注释。在这三种息肉类型之间进行差异表达分析,以分离可能参与息肉类型之间功能、组织学和模式差异的基因。近 7000 个转录本以息肉特异性的方式差异表达,包括同源域、肌球蛋白、毒素和 BMP 基因家族的成员。我们报告了这些息肉特异性转录本的亚组的空间表达,以验证我们的差异表达分析。

结论

尽管水螅的多态息肉可能起源于模式的简单变化,但它们是功能、结构和模式差异基因差异表达的结果。我们研究中鉴定的差异表达基因为进一步研究不同息肉类型之间的发育模式和功能差异提供了起点,这些差异赋予了 H. symbiolongicarpus 群体中分工的不同息肉类型。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c0a0/4072882/2d76c2e7feb3/12864_2014_6153_Fig1_HTML.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验