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使用同步化的芽殖酵母培养物分析复制时间。

Analysis of replication timing using synchronized budding yeast cultures.

作者信息

Peng Jie, Raghuraman M K, Feng Wenyi

机构信息

Department of Biochemistry & Molecular Biology, SUNY Upstate Medical University, 4287 Weiskotten Hall, 750 East Adams Street, Syracuse, NY, 13210, USA.

出版信息

Methods Mol Biol. 2014;1170:477-99. doi: 10.1007/978-1-4939-0888-2_26.

DOI:10.1007/978-1-4939-0888-2_26
PMID:24906331
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4338859/
Abstract

Eukaryotic DNA replication exhibits at once extraordinary fidelity and substantial plasticity. The importance of the apparent presence of a replication temporal program on a population level has been the subject of intense debate of late. Such debate has been, to a great extent, facilitated by methods that permit the description and analysis of replication dynamics in various model organisms, both globally and at a single-molecule level. Each of these methods provides a unique view of the replication process, and also presents challenges and questions in the interpretation of experimental observations. Thus, wider applications of these methods in different genetic backgrounds and in different organisms would doubtless enable us to better understand the execution and regulation of chromosomal DNA synthesis as well as its impact on genome maintenance.

摘要

真核生物的DNA复制既展现出非凡的保真度,又具有显著的可塑性。近期,在群体水平上明显存在复制时间程序这一现象的重要性引发了激烈的争论。在很大程度上,能够在全球范围内以及单分子水平描述和分析各种模式生物复制动态的方法推动了此类争论。每种方法都为复制过程提供了独特的视角,同时在解释实验观察结果时也带来了挑战和问题。因此,这些方法在不同遗传背景和不同生物体中的更广泛应用无疑将使我们能够更好地理解染色体DNA合成的执行与调控及其对基因组维持的影响。

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Analysis of replication timing using synchronized budding yeast cultures.使用同步化的芽殖酵母培养物分析复制时间。
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What influences DNA replication rate in budding yeast?哪些因素会影响出芽酵母中的 DNA 复制速率?
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Stochastic association of neighboring replicons creates replication factories in budding yeast.在出芽酵母中,相邻复制子的随机关联形成复制工厂。
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Replication dynamics of the yeast genome.酵母基因组的复制动态
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Replication dynamics in fission and budding yeasts through DNA polymerase tracking.通过DNA聚合酶追踪研究裂殖酵母和芽殖酵母中的复制动态。
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引用本文的文献

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Incision of damaged DNA in the presence of an impaired Smc5/6 complex imperils genome stability.在受损的Smc5/6复合体存在的情况下切割受损DNA会危及基因组稳定性。
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本文引用的文献

1
DNA replication timing and higher-order nuclear organization determine single-nucleotide substitution patterns in cancer genomes.DNA 复制时间和高级核组织决定了癌症基因组中单核苷酸替换模式。
Nat Commun. 2013;4:1502. doi: 10.1038/ncomms2502.
2
Conservation of replication timing reveals global and local regulation of replication origin activity.复制时间的保守性揭示了复制原点活性的全局和局部调控。
Genome Res. 2012 Oct;22(10):1953-62. doi: 10.1101/gr.139477.112. Epub 2012 Jul 5.
3
DNA replication timing and long-range DNA interactions predict mutational landscapes of cancer genomes.
DNA 复制时间和长程 DNA 相互作用预测癌症基因组的突变景观。
Nat Biotechnol. 2011 Nov 20;29(12):1103-8. doi: 10.1038/nbt.2030.
4
Replication timing: a fingerprint for cell identity and pluripotency.复制时间:细胞身份和多能性的指纹。
PLoS Comput Biol. 2011 Oct;7(10):e1002225. doi: 10.1371/journal.pcbi.1002225. Epub 2011 Oct 20.
5
The effect of Ku on telomere replication time is mediated by telomere length but is independent of histone tail acetylation.Ku 对端粒复制时间的影响是通过端粒长度介导的,但与组蛋白尾部乙酰化无关。
Mol Biol Cell. 2011 May 15;22(10):1753-65. doi: 10.1091/mbc.E10-06-0549. Epub 2011 Mar 25.
6
Eukaryotic DNA replication origins: many choices for appropriate answers.真核生物 DNA 复制起始点:多种选择,适者生存。
Nat Rev Mol Cell Biol. 2010 Oct;11(10):728-38. doi: 10.1038/nrm2976.
7
Evaluating genome-scale approaches to eukaryotic DNA replication.评估真核生物 DNA 复制的基因组规模方法。
Nat Rev Genet. 2010 Oct;11(10):673-84. doi: 10.1038/nrg2830. Epub 2010 Sep 1.
8
Comparative analysis of DNA replication timing reveals conserved large-scale chromosomal architecture.比较 DNA 复制时间分析揭示了保守的大规模染色体结构。
PLoS Genet. 2010 Jul 1;6(7):e1001011. doi: 10.1371/journal.pgen.1001011.
9
Mathematical modelling of whole chromosome replication.全染色体复制的数学建模
Nucleic Acids Res. 2010 Sep;38(17):5623-33. doi: 10.1093/nar/gkq343. Epub 2010 May 10.
10
Eukaryotic chromosome DNA replication: where, when, and how?真核染色体 DNA 复制:在何处、何时以及如何进行?
Annu Rev Biochem. 2010;79:89-130. doi: 10.1146/annurev.biochem.052308.103205.