Bao Hong-Xia, Tang Le, Yu Lu, Wang Xu-Yao, Li Yang, Deng Xia, Li Yong-Guo, Li Ang, Zhu Da-Ling, Johnston Randal N, Liu Gui-Rong, Feng Ye, Liu Shu-Lin
Genomics Research Center (one of The State-Province Key Laboratories of Biomedicine-Pharmaceutics of China), Harbin Medical University, 157 Baojian Road, Harbin 150081, China.
BMC Microbiol. 2014 Jun 14;14:157. doi: 10.1186/1471-2180-14-157.
Acquisition of exogenous genetic material is a key event in bacterial speciation. It seems reasonable to assume that recombination of the incoming DNA into genome would be more efficient with higher levels of relatedness between the DNA donor and recipient. If so, bacterial speciation would be a smooth process, leading to a continuous spectrum of genomic divergence of bacteria, which, however, is not the case as shown by recent findings. The goal of this study was todetermine if DNA transfer efficiency is correlated with the levels of sequence identity.
To compare the relative efficiency of exogenous DNA acquisition among closely related bacteria, we carried out phage-mediated transduction and plasmid-mediated transformation in representative Salmonella strains with different levels of relatedness. We found that the efficiency was remarkably variable even among genetically almost identical bacteria. Although there was a general tendency that more closely related DNA donor-recipient pairs had higher transduction efficiency, transformation efficiency exhibited over a thousand times difference among the closely related Salmonella strains.
DNA acquisition efficiency is greatly variable among bacteria that have as high as over 99% identical genetic background, suggesting that bacterial speciation involves highly complex processes affected not only by whether beneficial exogenous DNA may exist in the environment but also the "readiness" of the bacteria to accept it.
获取外源遗传物质是细菌物种形成中的关键事件。合理推测,随着DNA供体与受体之间亲缘关系水平的提高,进入的DNA与基因组的重组效率会更高。如果是这样,细菌物种形成将是一个平滑的过程,导致细菌基因组差异呈现连续的谱系,然而,最近的研究结果表明情况并非如此。本研究的目的是确定DNA转移效率是否与序列同一性水平相关。
为了比较亲缘关系相近的细菌中外源DNA获取的相对效率,我们在具有不同亲缘关系水平的代表性沙门氏菌菌株中进行了噬菌体介导的转导和质粒介导的转化。我们发现,即使在基因上几乎相同的细菌中,效率也存在显著差异。虽然一般趋势是亲缘关系越近的DNA供体 - 受体对转导效率越高,但在亲缘关系相近的沙门氏菌菌株中,转化效率相差超过一千倍。
在遗传背景高达99%以上相同的细菌中,DNA获取效率差异很大,这表明细菌物种形成涉及高度复杂的过程,不仅受环境中是否存在有益外源DNA的影响,还受细菌接受它的“准备程度”的影响。