Cysewski Piotr
Department of Physical Chemistry, Collegium Medicum of Bydgoszcz, Nicolaus Copernicus University in Toruń, Kurpińskiego 5, 85-950, Bydgoszcz, Poland,
J Mol Model. 2014 Jul;20(7):2276. doi: 10.1007/s00894-014-2276-7. Epub 2014 Jun 17.
A new approach for estimating local basicities/acidities of groups exposed on crystal surfaces was formulated and validated. The model, constructed within a quantitative structure-property relationship (QSPR) framework, allowed the expression of the protonic properties of amine and sulfonamide groups as functions of simple molecular descriptors of geometric types. This enabled the application of a QM/MM approach for the structural optimization of SNM molecules located on the surfaces of the dominant crystal habits. The obtained pKa values were used for classification of the protonic properties of four p-aminosulfonamide (SNM) polymorphs. The computed distributions of the surface pK a values suggested that, for all polymorphs, the amino group has statistically the same proton-accepting ability on the crystal surface as in bulk water solution. Although sulfonamide groups on the crystal surface-especially those distributed on β- and γ-dominant faces-seem to be more acidic compared to bulk water solution, the pK a values are statistically indistinguishable irrespective of the morphology. This suggests that experimentally observed differences in the perichromic properties of SNM polymorphs do not arise from local pH changes, Thus, apparent local basicities are to be relaed to structural similarity of SNM surfaces and thymol blue conformers anabling direct interactions.
一种用于估计晶体表面暴露基团局部碱度/酸度的新方法被制定并验证。该模型是在定量结构-性质关系(QSPR)框架内构建的,它能将胺基和磺酰胺基团的质子性质表示为几何类型的简单分子描述符的函数。这使得能够应用QM/MM方法对位于主要晶体习性表面的SNM分子进行结构优化。所获得的pKa值用于对四种对氨基磺酰胺(SNM)多晶型物的质子性质进行分类。计算得到的表面pKa值分布表明,对于所有多晶型物,氨基在晶体表面的质子接受能力在统计学上与在本体水溶液中相同。尽管晶体表面的磺酰胺基团——尤其是那些分布在β和γ主导面上的基团——与本体水溶液相比似乎更具酸性,但无论形态如何,pKa值在统计学上并无差异。这表明实验观察到的SNM多晶型物变色性质的差异并非源于局部pH变化,因此,表观局部碱度与SNM表面和百里酚蓝构象体的结构相似性有关,从而实现直接相互作用。