• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

假单胞菌属菌株P482的基因组序列,该菌株是从番茄根际分离得到的具有广谱抗菌活性的菌株

Genome Sequence of Pseudomonas sp. Strain P482, a Tomato Rhizosphere Isolate with Broad-Spectrum Antimicrobial Activity.

作者信息

Krzyzanowska Dorota M, Ossowicki Adam, Jafra Sylwia

机构信息

Laboratory of Biological Plant Protection, Intercollegiate Faculty of Biotechnology UG&MUG, University of Gdansk, Gdansk, Poland.

Laboratory of Biological Plant Protection, Intercollegiate Faculty of Biotechnology UG&MUG, University of Gdansk, Gdansk, Poland

出版信息

Genome Announc. 2014 Jun 26;2(3):e00394-14. doi: 10.1128/genomeA.00394-14.

DOI:10.1128/genomeA.00394-14
PMID:24970823
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4073107/
Abstract

The tomato rhizosphere isolate Pseudomonas sp. strain P482 is a member of a diverse group of fluorescent pseudomonads. P482 produces a yet unidentified broad-spectrum antimicrobial compound(s), active inter alia (i.a.) against Dickeya spp. Here, we present a nearly complete genome of P482 obtained by a hybrid assembly of Illumina and PacBio sequencing data.

摘要

番茄根际分离菌株假单胞菌属P482是荧光假单胞菌这一多样菌群的成员。P482能产生一种尚未鉴定的广谱抗菌化合物,尤其对迪基氏菌属具有活性。在此,我们展示了通过Illumina和PacBio测序数据的混合组装获得的P482的近乎完整的基因组。

相似文献

1
Genome Sequence of Pseudomonas sp. Strain P482, a Tomato Rhizosphere Isolate with Broad-Spectrum Antimicrobial Activity.假单胞菌属菌株P482的基因组序列,该菌株是从番茄根际分离得到的具有广谱抗菌活性的菌株
Genome Announc. 2014 Jun 26;2(3):e00394-14. doi: 10.1128/genomeA.00394-14.
2
High-Quality Complete Genome Resource of Tomato Rhizosphere Strain P482, a Representative of a Species with Biocontrol Activity Against Plant Pathogens.高质量番茄根际菌株 P482 全基因组资源,该菌株是一种对植物病原菌具有生物防治活性的代表种。
Mol Plant Microbe Interact. 2021 Dec;34(12):1450-1454. doi: 10.1094/MPMI-06-21-0136-A. Epub 2021 Nov 30.
3
When Genome-Based Approach Meets the "Old but Good": Revealing Genes Involved in the Antibacterial Activity of Pseudomonas sp. P482 against Soft Rot Pathogens.当基于基因组的方法遇上“经典且实用之物”:揭示参与假单胞菌属P482对软腐病原菌抗菌活性的基因
Front Microbiol. 2016 May 26;7:782. doi: 10.3389/fmicb.2016.00782. eCollection 2016.
4
The carbon source-dependent pattern of antimicrobial activity and gene expression in Pseudomonas donghuensis P482.在碳源依赖模式下,铜绿假单胞菌 P482 的抗菌活性和基因表达。
Sci Rep. 2021 May 26;11(1):10994. doi: 10.1038/s41598-021-90488-w.
5
Colonization of potato rhizosphere by GFP-tagged Bacillus subtilis MB73/2, Pseudomonas sp. P482 and Ochrobactrum sp. A44 shown on large sections of roots using enrichment sample preparation and confocal laser scanning microscopy.利用富集样本制备和共聚焦激光扫描显微镜,在根的大切片上观察到 GFP 标记的枯草芽孢杆菌 MB73/2、假单胞菌 P482 和食酸寡养单胞菌 A44 在马铃薯根际的定殖。
Sensors (Basel). 2012 Dec 18;12(12):17608-19. doi: 10.3390/s121217608.
6
The antimicrobial volatile power of the rhizospheric isolate Pseudomonas donghuensis P482.根际分离物东湖假单胞菌P482的抗菌挥发能力。
PLoS One. 2017 Mar 30;12(3):e0174362. doi: 10.1371/journal.pone.0174362. eCollection 2017.
7
Genome mining and metabolic profiling of the rhizosphere bacterium Pseudomonas sp. SH-C52 for antimicrobial compounds.根际细菌假单胞菌属SH-C52抗菌化合物的基因组挖掘与代谢谱分析
Front Microbiol. 2015 Jul 7;6:693. doi: 10.3389/fmicb.2015.00693. eCollection 2015.
8
Complete genome sequence of plant growth promoting Pseudomonas aeruginosa AJ D 2 an isolate from monocropic cotton rhizosphere.促进植物生长的铜绿假单胞菌AJ D 2的全基因组序列,该菌株分离自单作棉花根际。
Genomics. 2020 Mar;112(2):1318. doi: 10.1016/j.ygeno.2019.07.022. Epub 2019 Aug 9.
9
Phylogeny of HCN synthase-encoding hcnBC genes in biocontrol fluorescent pseudomonads and its relationship with host plant species and HCN synthesis ability.生防荧光假单胞菌中编码HCN合酶的hcnBC基因的系统发育及其与寄主植物物种和HCN合成能力的关系。
Mol Plant Microbe Interact. 2003 Jun;16(6):525-35. doi: 10.1094/MPMI.2003.16.6.525.
10
Streptomyces tunisialbus sp. nov., a novel Streptomyces species with antimicrobial activity.突尼斯链霉菌新种,一种具有抗菌活性的新型链霉菌。
Antonie Van Leeuwenhoek. 2018 Sep;111(9):1571-1581. doi: 10.1007/s10482-018-1046-4. Epub 2018 Feb 20.

引用本文的文献

1
Host-adaptive traits in the plant-colonizing Pseudomonas donghuensis P482 revealed by transcriptomic responses to exudates of tomato and maize.植物定殖菌 Pseudomonas donghuensis P482 对番茄和玉米分泌物的转录组响应揭示的宿主适应性特征。
Sci Rep. 2023 Jun 9;13(1):9445. doi: 10.1038/s41598-023-36494-6.
2
High-Quality Draft Genome Sequence of Pseudomonas wadenswilerensis CCOS 864.瓦登斯维勒假单胞菌CCOS 864的高质量基因组草图序列
Microbiol Resour Announc. 2018 Oct 25;7(16). doi: 10.1128/MRA.01059-18. eCollection 2018 Oct.
3
Genomic insights into the broad antifungal activity, plant-probiotic properties, and their regulation, in Pseudomonas donghuensis strain SVBP6.对假单胞菌 SVBP6 广谱抗真菌活性、植物益生菌特性及其调控的基因组研究。
PLoS One. 2018 Mar 14;13(3):e0194088. doi: 10.1371/journal.pone.0194088. eCollection 2018.
4
The antimicrobial volatile power of the rhizospheric isolate Pseudomonas donghuensis P482.根际分离物东湖假单胞菌P482的抗菌挥发能力。
PLoS One. 2017 Mar 30;12(3):e0174362. doi: 10.1371/journal.pone.0174362. eCollection 2017.
5
When Genome-Based Approach Meets the "Old but Good": Revealing Genes Involved in the Antibacterial Activity of Pseudomonas sp. P482 against Soft Rot Pathogens.当基于基因组的方法遇上“经典且实用之物”:揭示参与假单胞菌属P482对软腐病原菌抗菌活性的基因
Front Microbiol. 2016 May 26;7:782. doi: 10.3389/fmicb.2016.00782. eCollection 2016.

本文引用的文献

1
Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory.使用带有连续精炼的基本局部比对(BLASR)对单分子测序reads 进行映射:应用与理论。
BMC Bioinformatics. 2012 Sep 19;13:238. doi: 10.1186/1471-2105-13-238.
2
Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions.植物相关假单胞菌的比较基因组学:多营养相互作用相关性状多样性和遗传的研究。
PLoS Genet. 2012 Jul;8(7):e1002784. doi: 10.1371/journal.pgen.1002784. Epub 2012 Jul 5.
3
Toward almost closed genomes with GapFiller.使用 GapFiller 实现近乎闭合的基因组。
Genome Biol. 2012 Jun 25;13(6):R56. doi: 10.1186/gb-2012-13-6-r56.
4
The IGS Standard Operating Procedure for Automated Prokaryotic Annotation.IGS 原核生物自动注释标准操作规程。
Stand Genomic Sci. 2011 Apr 29;4(2):244-51. doi: 10.4056/sigs.1223234. Epub 2011 Apr 25.
5
Scaffolding pre-assembled contigs using SSPACE.使用 SSPACE 搭建预组装 contigs 的支架。
Bioinformatics. 2011 Feb 15;27(4):578-9. doi: 10.1093/bioinformatics/btq683. Epub 2010 Dec 12.
6
Genomics of secondary metabolite production by Pseudomonas spp.假单胞菌属次级代谢产物生成的基因组学
Nat Prod Rep. 2009 Nov;26(11):1408-46. doi: 10.1039/b817075b. Epub 2009 Oct 1.