• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

对人类DZIP1的核糖核酸组学分析揭示了其参与核糖核蛋白复合体和应激颗粒的形成。

Ribonomic analysis of human DZIP1 reveals its involvement in ribonucleoprotein complexes and stress granules.

作者信息

Shigunov Patrícia, Sotelo-Silveira Jose, Stimamiglio Marco Augusto, Kuligovski Crisciele, Irigoín Florencia, Badano Jose L, Munroe David, Correa Alejandro, Dallagiovanna Bruno

机构信息

Stem Cells Basic Biology Laboratory, Instituto Carlos Chagas, FIOCRUZ, Algacyr Munhoz Mader 3775, Curitiba 81350-010, Brazil.

出版信息

BMC Mol Biol. 2014 Jul 3;15:12. doi: 10.1186/1471-2199-15-12.

DOI:10.1186/1471-2199-15-12
PMID:24993635
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4091656/
Abstract

BACKGROUND

DZIP1 (DAZ-interacting protein 1) has been described as a component of the Hh signaling pathway with a putative regulatory role in ciliogenesis. DZIP1 interacts with DAZ RNA binding proteins in embryonic stem cells and human germ cells suggesting a role in mRNA regulation.

RESULTS

We investigated DZIP1 function in HeLa cells and its involvement in ribonucleoprotein complexes. DZIP1 was predominantly located in granules in the cytoplasm. Under oxidative stress conditions, DZIP1 re-localized to stress granules. DZIP appears to be important for the formation of stress granules during the stress response. We used immunoprecipitation assays with antibodies against DZIP1 and microarray hybridization to identify mRNAs associated with DZIP1. The genetic networks formed by the DZIP1-associated mRNAs were involved in cell cycle and gene expression regulation. DZIP1 is involved in the Hedgehog signaling pathway. We used cyclopamine, a specific inhibitor of this pathway, to analyze the expression of DZIP1 and its associated mRNAs. The abundance of DZIP1-associated mRNAs increased with treatment; however, the silencing or overexpression of DZIP1 in HeLa cells had no effect on the accumulation of the associated mRNAs. Polysomal profile analysis by sucrose gradient centrifugation demonstrated the presence of DZIP1 in the polysomal fraction.

CONCLUSIONS

Our results suggest that DZIP1 is part of an RNP complex that occupies various subcellular locations. The diversity of the mRNAs associated with DZIP1 suggests that this protein is a component of different RNPs associated with translating polysomes and with RNA granules.

摘要

背景

DZIP1(DAZ相互作用蛋白1)已被描述为Hh信号通路的一个组成部分,在纤毛发生中具有假定的调节作用。DZIP1在胚胎干细胞和人类生殖细胞中与DAZ RNA结合蛋白相互作用,提示其在mRNA调节中发挥作用。

结果

我们研究了DZIP1在HeLa细胞中的功能及其在核糖核蛋白复合物中的作用。DZIP1主要位于细胞质中的颗粒中。在氧化应激条件下,DZIP1重新定位于应激颗粒。DZIP似乎在应激反应期间应激颗粒的形成中起重要作用。我们使用针对DZIP1的抗体进行免疫沉淀测定和微阵列杂交,以鉴定与DZIP1相关的mRNA。由DZIP1相关mRNA形成的基因网络参与细胞周期和基因表达调节。DZIP1参与Hedgehog信号通路。我们使用环杷明(该通路的一种特异性抑制剂)来分析DZIP1及其相关mRNA的表达。随着处理,DZIP1相关mRNA的丰度增加;然而,在HeLa细胞中沉默或过表达DZIP1对相关mRNA的积累没有影响。通过蔗糖梯度离心进行的多核糖体谱分析表明DZIP1存在于多核糖体部分。

结论

我们的结果表明,DZIP1是一个核糖核蛋白复合物的一部分,该复合物占据各种亚细胞位置。与DZIP1相关的mRNA的多样性表明,这种蛋白质是与翻译多核糖体和RNA颗粒相关的不同核糖核蛋白的一个组成部分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f8/4091656/3d31ea986353/1471-2199-15-12-7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f8/4091656/4fdcb5c32bd6/1471-2199-15-12-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f8/4091656/f580deadbece/1471-2199-15-12-2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f8/4091656/df8a80ad8ee7/1471-2199-15-12-3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f8/4091656/2e0653cffd50/1471-2199-15-12-4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f8/4091656/cb84a4a14b97/1471-2199-15-12-5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f8/4091656/b61913c96292/1471-2199-15-12-6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f8/4091656/3d31ea986353/1471-2199-15-12-7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f8/4091656/4fdcb5c32bd6/1471-2199-15-12-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f8/4091656/f580deadbece/1471-2199-15-12-2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f8/4091656/df8a80ad8ee7/1471-2199-15-12-3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f8/4091656/2e0653cffd50/1471-2199-15-12-4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f8/4091656/cb84a4a14b97/1471-2199-15-12-5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f8/4091656/b61913c96292/1471-2199-15-12-6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f8/4091656/3d31ea986353/1471-2199-15-12-7.jpg

相似文献

1
Ribonomic analysis of human DZIP1 reveals its involvement in ribonucleoprotein complexes and stress granules.对人类DZIP1的核糖核酸组学分析揭示了其参与核糖核蛋白复合体和应激颗粒的形成。
BMC Mol Biol. 2014 Jul 3;15:12. doi: 10.1186/1471-2199-15-12.
2
Stabilization of speckle-type POZ protein (Spop) by Daz interacting protein 1 (Dzip1) is essential for Gli turnover and the proper output of Hedgehog signaling.Daz 相互作用蛋白 1(Dzip1)稳定斑型 POZ 蛋白(Spop)对于 Gli 周转和 Hedgehog 信号的适当输出是必需的。
J Biol Chem. 2013 Nov 8;288(45):32809-32820. doi: 10.1074/jbc.M113.512962. Epub 2013 Sep 26.
3
Centrosomal protein DZIP1 regulates Hedgehog signaling by promoting cytoplasmic retention of transcription factor GLI3 and affecting ciliogenesis.中心体蛋白 DZIP1 通过促进转录因子 GLI3 的细胞质滞留和影响纤毛发生来调节 Hedgehog 信号通路。
J Biol Chem. 2013 Oct 11;288(41):29518-29. doi: 10.1074/jbc.M113.492066. Epub 2013 Aug 16.
4
The antagonistic action of B56-containing protein phosphatase 2As and casein kinase 2 controls the phosphorylation and Gli turnover function of Daz interacting protein 1.B56 包含的蛋白磷酸酶 2As 和酪蛋白激酶 2 的拮抗作用控制 Daz 相互作用蛋白 1 的磷酸化和 Gli 周转功能。
J Biol Chem. 2011 Oct 21;286(42):36171-9. doi: 10.1074/jbc.M111.274761. Epub 2011 Aug 30.
5
Novel Staufen1 ribonucleoproteins prevent formation of stress granules but favour encapsidation of HIV-1 genomic RNA.新型 Staufen1 核糖核蛋白可阻止应激颗粒形成,但有利于 HIV-1 基因组 RNA 的包裹。
J Cell Sci. 2010 Feb 1;123(Pt 3):369-83. doi: 10.1242/jcs.055897. Epub 2010 Jan 5.
6
RNAi Screen Identifies Novel Regulators of RNP Granules in the Caenorhabditis elegans Germ Line.RNA干扰筛选鉴定出秀丽隐杆线虫生殖系中核糖核蛋白颗粒的新型调控因子。
G3 (Bethesda). 2016 Aug 9;6(8):2643-54. doi: 10.1534/g3.116.031559.
7
Multicolour single-molecule tracking of mRNA interactions with RNP granules.多色单分子追踪 mRNA 与 RNP 颗粒的相互作用。
Nat Cell Biol. 2019 Feb;21(2):162-168. doi: 10.1038/s41556-018-0263-4. Epub 2019 Jan 21.
8
The RNA-binding protein Fus directs translation of localized mRNAs in APC-RNP granules.RNA 结合蛋白 Fus 在 APC-RNP 颗粒中指导局部 mRNA 的翻译。
J Cell Biol. 2013 Dec 9;203(5):737-46. doi: 10.1083/jcb.201306058. Epub 2013 Dec 2.
9
Dissolution of ribonucleoprotein condensates by the embryonic stem cell protein L1TD1.核糖核蛋白凝聚物的溶解由胚胎干细胞蛋白 L1TD1 完成。
Nucleic Acids Res. 2024 Apr 12;52(6):3310-3326. doi: 10.1093/nar/gkad1244.
10
RNA self-assembly contributes to stress granule formation and defining the stress granule transcriptome.RNA 自组装有助于应激颗粒的形成,并定义应激颗粒的转录组。
Proc Natl Acad Sci U S A. 2018 Mar 13;115(11):2734-2739. doi: 10.1073/pnas.1800038115. Epub 2018 Feb 26.

引用本文的文献

1
Expression as a Prognostic Marker in Gastric Cancer: A Bioinformatics-Based Analysis.作为胃癌预后标志物的表达:基于生物信息学的分析
Pharmgenomics Pers Med. 2021 Sep 16;14:1151-1168. doi: 10.2147/PGPM.S325701. eCollection 2021.
2
Response to stress in biological disorders: Implications of stress granule assembly and function.生物紊乱中的应激反应:应激颗粒组装和功能的意义。
Cell Prolif. 2021 Aug;54(8):e13086. doi: 10.1111/cpr.13086. Epub 2021 Jun 25.
3
RNA-Binding RING E3-Ligase DZIP3/hRUL138 Stabilizes Cyclin D1 to Drive Cell-Cycle and Cancer Progression.

本文引用的文献

1
Stabilization of speckle-type POZ protein (Spop) by Daz interacting protein 1 (Dzip1) is essential for Gli turnover and the proper output of Hedgehog signaling.Daz 相互作用蛋白 1(Dzip1)稳定斑型 POZ 蛋白(Spop)对于 Gli 周转和 Hedgehog 信号的适当输出是必需的。
J Biol Chem. 2013 Nov 8;288(45):32809-32820. doi: 10.1074/jbc.M113.512962. Epub 2013 Sep 26.
2
Centrosomal protein DZIP1 regulates Hedgehog signaling by promoting cytoplasmic retention of transcription factor GLI3 and affecting ciliogenesis.中心体蛋白 DZIP1 通过促进转录因子 GLI3 的细胞质滞留和影响纤毛发生来调节 Hedgehog 信号通路。
J Biol Chem. 2013 Oct 11;288(41):29518-29. doi: 10.1074/jbc.M113.492066. Epub 2013 Aug 16.
3
RNA 结合环指 E3 连接酶 DZIP3/hRUL138 稳定细胞周期蛋白 D1 以驱动细胞周期和癌症进展。
Cancer Res. 2021 Jan 15;81(2):315-331. doi: 10.1158/0008-5472.CAN-20-1871. Epub 2020 Oct 16.
4
Crosstalk between Hedgehog pathway and energy pathways in human adipose-derived stem cells: A deep sequencing analysis of polysome-associated RNA.人脂肪间充质干细胞中 Hedgehog 信号通路与能量代谢通路的串扰:多核糖体相关 RNA 的深度测序分析。
Sci Rep. 2018 May 30;8(1):8411. doi: 10.1038/s41598-018-26533-y.
5
DAZ Family Proteins, Key Players for Germ Cell Development.DAZ家族蛋白,生殖细胞发育的关键因子。
Int J Biol Sci. 2015 Aug 15;11(10):1226-35. doi: 10.7150/ijbs.11536. eCollection 2015.
The roles of the DAZ family in spermatogenesis: More than just translation?
DAZ家族在精子发生中的作用:仅仅是翻译吗?
Spermatogenesis. 2011 Jan 1;1(1):36-46. doi: 10.4161/spmg.1.1.14659.
4
Development of a novel approach, the epigenome-based outlier approach, to identify tumor-suppressor genes silenced by aberrant DNA methylation.开发一种新方法,基于表观基因组的离群值方法,来识别被异常 DNA 甲基化沉默的肿瘤抑制基因。
Cancer Lett. 2012 Sep 28;322(2):204-12. doi: 10.1016/j.canlet.2012.03.016. Epub 2012 Mar 17.
5
DAZL is essential for stress granule formation implicated in germ cell survival upon heat stress.DAZL 对于热应激条件下与生殖细胞存活相关的应激颗粒的形成至关重要。
Development. 2012 Feb;139(3):568-78. doi: 10.1242/dev.075846.
6
The antagonistic action of B56-containing protein phosphatase 2As and casein kinase 2 controls the phosphorylation and Gli turnover function of Daz interacting protein 1.B56 包含的蛋白磷酸酶 2As 和酪蛋白激酶 2 的拮抗作用控制 Daz 相互作用蛋白 1 的磷酸化和 Gli 周转功能。
J Biol Chem. 2011 Oct 21;286(42):36171-9. doi: 10.1074/jbc.M111.274761. Epub 2011 Aug 30.
7
Targeting the Hedgehog pathway in cancer.针对癌症中的 Hedgehog 通路。
Ther Adv Med Oncol. 2010 Jul;2(4):237-50. doi: 10.1177/1758834010366430.
8
PUMILIO-2 is involved in the positive regulation of cellular proliferation in human adipose-derived stem cells.PUMILIO-2 参与正向调控人脂肪来源干细胞的细胞增殖。
Stem Cells Dev. 2012 Jan 20;21(2):217-27. doi: 10.1089/scd.2011.0143. Epub 2011 Jul 26.
9
DAZAP1, an RNA-binding protein required for development and spermatogenesis, can regulate mRNA translation.DAZAP1,一种在发育和精子发生过程中必需的 RNA 结合蛋白,能够调节 mRNA 翻译。
RNA. 2011 Jul;17(7):1282-95. doi: 10.1261/rna.2717711. Epub 2011 May 16.
10
Vertebrate Hedgehog signaling: cilia rule.脊椎动物 Hedgehog 信号通路:纤毛规则。
BMC Biol. 2010 Jul 29;8:102. doi: 10.1186/1741-7007-8-102.