Suppr超能文献

枯草芽孢杆菌枯草亚种实验室菌株JH642(AG174)和AG1839的全基因组序列

Complete Genome Sequences of Bacillus subtilis subsp. subtilis Laboratory Strains JH642 (AG174) and AG1839.

作者信息

Smith Janet L, Goldberg Jonathan M, Grossman Alan D

机构信息

Department of Biology, MIT, Cambridge, Massachusetts, USA.

Broad Institute, Cambridge, Massachusetts, USA.

出版信息

Genome Announc. 2014 Jul 3;2(4):e00663-14. doi: 10.1128/genomeA.00663-14.

Abstract

The Gram-positive bacterium Bacillus subtilis is widely used for studies of cellular and molecular processes. We announce the complete genomic sequences of strain AG174, our stock of the commonly used strain JH642, and strain AG1839, a derivative that contains a mutation in the replication initiation gene dnaB and a linked Tn917.

摘要

革兰氏阳性细菌枯草芽孢杆菌被广泛用于细胞和分子过程的研究。我们公布了AG174菌株、常用菌株JH642的储备菌株以及AG1839菌株的完整基因组序列,AG1839菌株是一种衍生物,其复制起始基因dnaB发生了突变,并带有一个相连的Tn917。

相似文献

1
Complete Genome Sequences of Bacillus subtilis subsp. subtilis Laboratory Strains JH642 (AG174) and AG1839.
Genome Announc. 2014 Jul 3;2(4):e00663-14. doi: 10.1128/genomeA.00663-14.
3
Complete Genome Sequence of Undomesticated Strain NCIB 3610.
Genome Announc. 2017 May 18;5(20):e00364-17. doi: 10.1128/genomeA.00364-17.
5
Complete Genome Sequence of Bacillus subtilis Strain PY79.
Genome Announc. 2013 Dec 19;1(6):e01085-13. doi: 10.1128/genomeA.01085-13.
7
Complete Genome Sequence of Bacillus subtilis subsp. subtilis Strain 3NA.
Genome Announc. 2015 Mar 12;3(2):e00084-15. doi: 10.1128/genomeA.00084-15.
9
Complete Genome Sequence of Bacillus subtilis subsp. subtilis Strain ∆6.
Genome Announc. 2016 Jul 28;4(4):e00759-16. doi: 10.1128/genomeA.00759-16.
10
Biofilm-defective mutants of Bacillus subtilis.
J Mol Microbiol Biotechnol. 2004;8(3):177-88. doi: 10.1159/000085790.

引用本文的文献

1
Identification of insertion sites for the integrative and conjugative element Tn916 in the Bacillus subtilis chromosome.
PLoS One. 2025 May 16;20(5):e0318964. doi: 10.1371/journal.pone.0318964. eCollection 2025.
2
An antisense RNA regulates production of DnaA and affects sporulation in Bacillus subtilis.
PLoS Genet. 2025 May 14;21(5):e1011625. doi: 10.1371/journal.pgen.1011625. eCollection 2025 May.
3
Identification of insertion sites for the integrative and conjugative element Tn9 in the chromosome.
bioRxiv. 2025 Jan 28:2025.01.28.635231. doi: 10.1101/2025.01.28.635231.
4
Activation and modulation of the host response to DNA damage by an integrative and conjugative element.
J Bacteriol. 2025 Feb 20;207(2):e0046224. doi: 10.1128/jb.00462-24. Epub 2025 Jan 23.
5
Transcription termination and antitermination are critical for the fitness and function of the integrative and conjugative element Tn916.
PLoS Genet. 2024 Dec 9;20(12):e1011417. doi: 10.1371/journal.pgen.1011417. eCollection 2024 Dec.
6
Regulation of the SOS response and homologous recombination by an integrative and conjugative element.
bioRxiv. 2024 Oct 12:2024.10.11.617942. doi: 10.1101/2024.10.11.617942.
7
Activation and modulation of the host response to DNA damage by an integrative and conjugative element.
bioRxiv. 2024 Oct 9:2024.10.09.617469. doi: 10.1101/2024.10.09.617469.
8
An In Vitro Study on the Role of Cellulases and Xylanases of in Dairy Cattle Nutrition.
Microorganisms. 2024 Jan 30;12(2):300. doi: 10.3390/microorganisms12020300.
9
Oxidative stress drives mutagenesis through transcription-coupled repair in bacteria.
Proc Natl Acad Sci U S A. 2023 Jul 4;120(27):e2300761120. doi: 10.1073/pnas.2300761120. Epub 2023 Jun 26.
10
Timing of integration into the chromosome is critical for the fitness of an integrative and conjugative element and its bacterial host.
PLoS Genet. 2023 Feb 13;19(2):e1010524. doi: 10.1371/journal.pgen.1010524. eCollection 2023 Feb.

本文引用的文献

1
Complete Genome Sequence of Bacillus subtilis Strain PY79.
Genome Announc. 2013 Dec 19;1(6):e01085-13. doi: 10.1128/genomeA.01085-13.
2
Prodigal: prokaryotic gene recognition and translation initiation site identification.
BMC Bioinformatics. 2010 Mar 8;11:119. doi: 10.1186/1471-2105-11-119.
3
From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later.
Microbiology (Reading). 2009 Jun;155(Pt 6):1758-1775. doi: 10.1099/mic.0.027839-0. Epub 2009 Apr 21.
4
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
Genome Biol. 2009;10(3):R25. doi: 10.1186/gb-2009-10-3-r25. Epub 2009 Mar 4.
5
High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies.
PLoS Genet. 2008 Aug 1;4(8):e1000139. doi: 10.1371/journal.pgen.1000139.
6
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
7
Characterization of a mutation in the acetolactate synthase of Bacillus subtilis that causes a cold-sensitive phenotype.
FEMS Microbiol Lett. 2007 Jul;272(1):30-4. doi: 10.1111/j.1574-6968.2007.00739.x. Epub 2007 May 4.
8
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
9
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W686-9. doi: 10.1093/nar/gki366.
10
Mauve: multiple alignment of conserved genomic sequence with rearrangements.
Genome Res. 2004 Jul;14(7):1394-403. doi: 10.1101/gr.2289704.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验