Gabison Laure, Colloc'h Nathalie, Prangé Thierry
Faculty of Pharmacy, UMR 8015 CNRS Laboratoire de Cristallographie et RMN Biologiques, 4 Avenue de l'Observatoire, 75006 Paris, France.
ISTCT, UMR 6301-CNRS-Université de Caen-Normandie Université-CEA, Centre Cyceron, Boulevard Becquerel, 14074 Caen CEDEX, France.
Acta Crystallogr F Struct Biol Commun. 2014 Jul;70(Pt 7):896-902. doi: 10.1107/S2053230X14011753. Epub 2014 Jun 18.
The inhibition of urate oxidase (UOX) by azide was investigated by X-ray diffraction techniques and compared with cyanide inhibition. Two well characterized sites for reagents are present in the enzyme: the dioxygen site and the substrate-binding site. To examine the selectivity of these sites towards azide inhibition, several crystallization conditions were developed. UOX was co-crystallized with azide (N3) in the presence or absence of either uric acid (UA, the natural substrate) or 8-azaxanthine (8AZA, a competitive inhibitor). In a second set of experiments, previously grown orthorhombic crystals of the UOX-UA or UOX-8AZA complexes were soaked in sodium azide solutions. In a third set of experiments, orthorhombic crystals of UOX with the exchangeable ligand 8-nitroxanthine (8NXN) were soaked in a solution containing uric acid and azide simultaneously (competitive soaking). In all assays, the soaking periods were either short (a few hours) or long (one or two months). These different experimental conditions showed that one or other of the sites, or the two sites together, could be inhibited. This also demonstrated that azide not only competes with dioxygen as cyanide does but also competes with the substrate for its enzymatic site. A model in agreement with experimental data would be an azide in equilibrium between two sites, kinetically in favour of the dioxygen site and thermodynamically in favour of the substrate-binding site.
采用X射线衍射技术研究了叠氮化物对尿酸氧化酶(UOX)的抑制作用,并与氰化物抑制作用进行了比较。该酶中有两个特征明确的试剂作用位点:双氧位点和底物结合位点。为了研究这些位点对叠氮化物抑制作用的选择性,开发了几种结晶条件。在有或没有尿酸(UA,天然底物)或8-氮杂黄嘌呤(8AZA,一种竞争性抑制剂)存在的情况下,使UOX与叠氮化物(N3)共结晶。在第二组实验中,将先前生长的UOX-UA或UOX-8AZA复合物的正交晶体浸泡在叠氮化钠溶液中。在第三组实验中,将含有可交换配体8-硝基黄嘌呤(8NXN)的UOX正交晶体同时浸泡在含有尿酸和叠氮化物的溶液中(竞争性浸泡)。在所有测定中,浸泡时间要么短(几小时)要么长(一两个月)。这些不同的实验条件表明,其中一个位点或两个位点一起可能会被抑制。这也证明了叠氮化物不仅像氰化物那样与双氧竞争,而且还与底物竞争其酶作用位点。与实验数据相符的模型是,叠氮化物在两个位点之间处于平衡状态,动力学上有利于双氧位点,热力学上有利于底物结合位点。