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来自结核分枝杆菌的一种假定天冬氨酸转氨酶AspB的过表达、纯化、结晶及结构测定

Overexpression, purification, crystallization and structure determination of AspB, a putative aspartate aminotransferase from Mycobacterium tuberculosis.

作者信息

Saroj Deepak Chandra, Singh Khundrakpam Herojit, Anant Avishek, Biswal Bichitra K

机构信息

Protein Crystallography Laboratory, National Institute of Immunology, Aruna Asaf Ali Marg, New Delhi 110 067, India.

出版信息

Acta Crystallogr F Struct Biol Commun. 2014 Jul;70(Pt 7):928-32. doi: 10.1107/S2053230X14011820. Epub 2014 Jun 18.

Abstract

A recombinant version of a putative aspartate aminotransferase, AspB (encoded by the ORF Rv3565), from Mycobacterium tuberculosis (Mtb) was overexpressed in M. smegmatis and purified to homogeneity using liquid chromatography. Crystals of AspB were grown in a condition consisting of 0.2 M ammonium phosphate monobasic, 0.1 M calcium chloride dihydrate employing the hanging-drop vapour-diffusion method at 298 K. The crystals diffracted to a limit of 2.50 Å resolution and belonged to the orthorhombic space group P2₁2₁2₁, with unit-cell parameters a=93.27, b=98.19, c=198.70 Å. The structure of AspB was solved by the molecular-replacement method using a putative aminotransferase from Silicibacter pomeroyi (PDB entry 3h14) as the search model. The template shares 46% amino-acid sequence identity with Mtb AspB. The crystal asymmetric unit contains four AspB molecules (the Mr of each is 42,035 Da).

摘要

结核分枝杆菌(Mtb)中一种假定的天冬氨酸转氨酶AspB(由开放阅读框Rv3565编码)的重组版本在耻垢分枝杆菌中过表达,并通过液相色谱法纯化至同质。采用悬滴气相扩散法,在由0.2 M磷酸二氢铵、0.1 M二水合氯化钙组成的条件下,于298 K培养AspB晶体。这些晶体的衍射极限为2.50 Å分辨率,属于正交晶系空间群P2₁2₁2₁,晶胞参数a = 93.27、b = 98.19、c = 198.70 Å。使用来自波默罗伊氏硅细菌的假定转氨酶(蛋白质数据银行条目3h14)作为搜索模型,通过分子置换法解析了AspB的结构。该模板与Mtb AspB的氨基酸序列同一性为46%。晶体不对称单元包含四个AspB分子(每个分子的相对分子质量为42,035 Da)。

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