• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

将 NIF DISCO 框架扩展到自动化复杂工作流程:协调来自不同神经科学信息资源的数据的采集和整合。

Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources.

机构信息

Center for Medical Informatics, Yale University School of Medicine New Haven, CT, USA ; VA Connecticut Healthcare System, US Department of Veterans Affairs West Haven, CT, USA ; Department of Neurobiology, Yale University School of Medicine New Haven, CT, USA.

Center for Medical Informatics, Yale University School of Medicine New Haven, CT, USA.

出版信息

Front Neuroinform. 2014 May 28;8:58. doi: 10.3389/fninf.2014.00058. eCollection 2014.

DOI:10.3389/fninf.2014.00058
PMID:25018728
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4071641/
Abstract

This paper describes how DISCO, the data aggregator that supports the Neuroscience Information Framework (NIF), has been extended to play a central role in automating the complex workflow required to support and coordinate the NIF's data integration capabilities. The NIF is an NIH Neuroscience Blueprint initiative designed to help researchers access the wealth of data related to the neurosciences available via the Internet. A central component is the NIF Federation, a searchable database that currently contains data from 231 data and information resources regularly harvested, updated, and warehoused in the DISCO system. In the past several years, DISCO has greatly extended its functionality and has evolved to play a central role in automating the complex, ongoing process of harvesting, validating, integrating, and displaying neuroscience data from a growing set of participating resources. This paper provides an overview of DISCO's current capabilities and discusses a number of the challenges and future directions related to the process of coordinating the integration of neuroscience data within the NIF Federation.

摘要

本文介绍了数据聚合器 DISCO 是如何扩展其功能,以在支持和协调神经信息框架(NIF)的数据集成功能所需的复杂工作流程中发挥核心作用的。NIF 是美国国立卫生研究院神经科学蓝图倡议的一部分,旨在帮助研究人员通过互联网访问与神经科学相关的大量数据。其核心组件是 NIF 联合会,这是一个可搜索的数据库,目前包含来自 231 个定期采集、更新和存储在 DISCO 系统中的数据和信息资源的数据。在过去的几年中,DISCO 极大地扩展了其功能,并发展成为自动化从不断增加的参与资源中采集、验证、集成和显示神经科学数据这一复杂、持续过程的核心。本文概述了 DISCO 的当前功能,并讨论了在协调 NIF 联合会内的神经科学数据集成过程中所面临的一些挑战和未来方向。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74bd/4071641/5891002753da/fninf-08-00058-g011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74bd/4071641/8d7229570d98/fninf-08-00058-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74bd/4071641/fa87f389fe47/fninf-08-00058-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74bd/4071641/5de13d429788/fninf-08-00058-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74bd/4071641/2c4febf49e1e/fninf-08-00058-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74bd/4071641/d2a606b44ace/fninf-08-00058-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74bd/4071641/ab722b24a482/fninf-08-00058-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74bd/4071641/4404354fc583/fninf-08-00058-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74bd/4071641/a1f65f894e5f/fninf-08-00058-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74bd/4071641/1f3e27bd7300/fninf-08-00058-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74bd/4071641/497b5b13f078/fninf-08-00058-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74bd/4071641/5891002753da/fninf-08-00058-g011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74bd/4071641/8d7229570d98/fninf-08-00058-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74bd/4071641/fa87f389fe47/fninf-08-00058-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74bd/4071641/5de13d429788/fninf-08-00058-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74bd/4071641/2c4febf49e1e/fninf-08-00058-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74bd/4071641/d2a606b44ace/fninf-08-00058-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74bd/4071641/ab722b24a482/fninf-08-00058-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74bd/4071641/4404354fc583/fninf-08-00058-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74bd/4071641/a1f65f894e5f/fninf-08-00058-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74bd/4071641/1f3e27bd7300/fninf-08-00058-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74bd/4071641/497b5b13f078/fninf-08-00058-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74bd/4071641/5891002753da/fninf-08-00058-g011.jpg

相似文献

1
Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources.将 NIF DISCO 框架扩展到自动化复杂工作流程:协调来自不同神经科学信息资源的数据的采集和整合。
Front Neuroinform. 2014 May 28;8:58. doi: 10.3389/fninf.2014.00058. eCollection 2014.
2
The NIF DISCO Framework: facilitating automated integration of neuroscience content on the web.NIF DISCO 框架:促进神经科学内容在网络上的自动化整合。
Neuroinformatics. 2010 Jun;8(2):101-12. doi: 10.1007/s12021-010-9068-8.
3
Development and use of Ontologies Inside the Neuroscience Information Framework: A Practical Approach.神经科学信息框架内本体的开发与应用:一种实用方法。
Front Genet. 2012 Jun 22;3:111. doi: 10.3389/fgene.2012.00111. eCollection 2012.
4
The neuroscience information framework: a data and knowledge environment for neuroscience.神经科学信息框架:一个用于神经科学的数据与知识环境。
Neuroinformatics. 2008 Sep;6(3):149-60. doi: 10.1007/s12021-008-9024-z. Epub 2008 Oct 23.
5
Federated access to heterogeneous information resources in the Neuroscience Information Framework (NIF).在神经科学信息框架(NIF)中对异构信息资源的联合访问。
Neuroinformatics. 2008 Sep;6(3):205-17. doi: 10.1007/s12021-008-9033-y. Epub 2008 Oct 29.
6
The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience.NIFSTD 和 BIRNLex 词汇表:构建神经科学综合本体。
Neuroinformatics. 2008 Sep;6(3):175-94. doi: 10.1007/s12021-008-9032-z. Epub 2008 Oct 31.
7
A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework.神经科学信息框架的人机混合资源管理管道。
Database (Oxford). 2012 Mar 20;2012:bas005. doi: 10.1093/database/bas005. Print 2012.
8
Issues in the design of a pilot concept-based query interface for the neuroinformatics information framework.神经信息学信息框架中基于概念的试验性查询界面设计中的问题。
Neuroinformatics. 2008 Sep;6(3):229-39. doi: 10.1007/s12021-008-9035-9. Epub 2008 Oct 25.
9
The NIF LinkOut broker: a web resource to facilitate federated data integration using NCBI identifiers.NIF 链接输出代理:一个使用 NCBI 标识符促进联合数据集成的网络资源。
Neuroinformatics. 2008 Sep;6(3):219-27. doi: 10.1007/s12021-008-9025-y. Epub 2008 Oct 31.
10
Approaches to neuroscience data integration.神经科学数据整合方法。
Brief Bioinform. 2009 Jul;10(4):345-53. doi: 10.1093/bib/bbp029.

引用本文的文献

1
The Antibody Registry: ten years of registering antibodies.抗体资源库:十年抗体注册历程。
Nucleic Acids Res. 2023 Jan 6;51(D1):D358-D367. doi: 10.1093/nar/gkac927.
2
Foundry: a message-oriented, horizontally scalable ETL system for scientific data integration and enhancement.铸造厂:一种面向消息的、水平可扩展的 ETL 系统,用于科学数据集成和增强。
Database (Oxford). 2018 Jan 1;2018:bay130. doi: 10.1093/database/bay130.
3
Distributed retrieval engine for the development of cloud-deployed biological databases.用于开发云部署生物数据库的分布式检索引擎。

本文引用的文献

1
A survey of the neuroscience resource landscape: perspectives from the neuroscience information framework.神经科学资源图谱调查:来自神经科学信息框架的观点。
Int Rev Neurobiol. 2012;103:39-68. doi: 10.1016/B978-0-12-388408-4.00003-4.
2
Automated realtime data import for the i2b2 clinical data warehouse: introducing the HL7 ETL cell.用于i2b2临床数据仓库的自动化实时数据导入:介绍HL7 ETL单元。
Stud Health Technol Inform. 2012;180:270-4.
3
Development and use of Ontologies Inside the Neuroscience Information Framework: A Practical Approach.
BioData Min. 2018 Nov 12;11:26. doi: 10.1186/s13040-018-0185-5. eCollection 2018.
4
A Neuroimaging Web Services Interface as a Cyber Physical System for Medical Imaging and Data Management in Brain Research: Design Study.作为脑研究中医学成像与数据管理的信息物理系统的神经成像网络服务接口:设计研究
JMIR Med Inform. 2018 Apr 26;6(2):e26. doi: 10.2196/medinform.9063.
5
ORDB, HORDE, ODORactor and other on-line knowledge resources of olfactory receptor-odorant interactions.ORDB、HORDE、嗅觉受体与气味剂相互作用的在线知识资源及其他。 (注:原文中“ODORactor”表述有误,可能是“ODOR”之类的错误拼写,这里按原样翻译)
Database (Oxford). 2016 Oct 2;2016. doi: 10.1093/database/baw132. Print 2016.
6
The Resource Identification Initiative: a cultural shift in publishing.资源识别倡议:出版领域的文化转变。
Brain Behav. 2015 Dec 8;6(1):e00417. doi: 10.1002/brb3.417. eCollection 2016 Jan.
7
Resource Disambiguator for the Web: Extracting Biomedical Resources and Their Citations from the Scientific Literature.网络资源消歧器:从科学文献中提取生物医学资源及其引用信息
PLoS One. 2016 Jan 5;11(1):e0146300. doi: 10.1371/journal.pone.0146300. eCollection 2016.
8
The Resource Identification Initiative: A Cultural Shift in Publishing.资源识别倡议:出版领域的文化转变。
J Comp Neurol. 2016 Jan 1;524(1):8-22. doi: 10.1002/cne.23913.
9
The Resource Identification Initiative: A Cultural Shift in Publishing.资源标识倡议:出版界的文化变革。
Neuroinformatics. 2016 Apr;14(2):169-82. doi: 10.1007/s12021-015-9284-3.
10
The NIDDK Information Network: A Community Portal for Finding Data, Materials, and Tools for Researchers Studying Diabetes, Digestive, and Kidney Diseases.美国国立糖尿病、消化和肾脏疾病研究所信息网络:一个为研究糖尿病、消化系统疾病和肾脏疾病的研究人员查找数据、材料和工具的社区门户。
PLoS One. 2015 Sep 22;10(9):e0136206. doi: 10.1371/journal.pone.0136206. eCollection 2015.
神经科学信息框架内本体的开发与应用:一种实用方法。
Front Genet. 2012 Jun 22;3:111. doi: 10.3389/fgene.2012.00111. eCollection 2012.
4
A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework.神经科学信息框架的人机混合资源管理管道。
Database (Oxford). 2012 Mar 20;2012:bas005. doi: 10.1093/database/bas005. Print 2012.
5
The InterPro BioMart: federated query and web service access to the InterPro Resource.InterPro 生物信息学资源中心:联合查询和网络服务访问 InterPro 资源。
Database (Oxford). 2011 Jul 23;2011:bar033. doi: 10.1093/database/bar033. Print 2011.
6
The NIF DISCO Framework: facilitating automated integration of neuroscience content on the web.NIF DISCO 框架:促进神经科学内容在网络上的自动化整合。
Neuroinformatics. 2010 Jun;8(2):101-12. doi: 10.1007/s12021-010-9068-8.
7
The NIF LinkOut broker: a web resource to facilitate federated data integration using NCBI identifiers.NIF 链接输出代理:一个使用 NCBI 标识符促进联合数据集成的网络资源。
Neuroinformatics. 2008 Sep;6(3):219-27. doi: 10.1007/s12021-008-9025-y. Epub 2008 Oct 31.
8
The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience.NIFSTD 和 BIRNLex 词汇表:构建神经科学综合本体。
Neuroinformatics. 2008 Sep;6(3):175-94. doi: 10.1007/s12021-008-9032-z. Epub 2008 Oct 31.
9
Federated access to heterogeneous information resources in the Neuroscience Information Framework (NIF).在神经科学信息框架(NIF)中对异构信息资源的联合访问。
Neuroinformatics. 2008 Sep;6(3):205-17. doi: 10.1007/s12021-008-9033-y. Epub 2008 Oct 29.
10
The neuroscience information framework: a data and knowledge environment for neuroscience.神经科学信息框架:一个用于神经科学的数据与知识环境。
Neuroinformatics. 2008 Sep;6(3):149-60. doi: 10.1007/s12021-008-9024-z. Epub 2008 Oct 23.