采用PacBio单分子实时测序技术对伪狂犬病病毒基因组的卡普兰毒株进行测序。
Strain Kaplan of Pseudorabies Virus Genome Sequenced by PacBio Single-Molecule Real-Time Sequencing Technology.
作者信息
Tombácz Dóra, Sharon Donald, Oláh Péter, Csabai Zsolt, Snyder Michael, Boldogkői Zsolt
机构信息
Department of Medical Biology, Faculty of Medicine, University of Szeged, Szeged, Hungary.
Department of Genetics, School of Medicine, Stanford University, Stanford, California, USA.
出版信息
Genome Announc. 2014 Jul 17;2(4):e00628-14. doi: 10.1128/genomeA.00628-14.
Abstract
Pseudorabies virus (PRV) is a neurotropic herpesvirus that causes Aujeszky's disease in pigs. PRV strains are widely used as transsynaptic tracers for mapping neural circuits. We present here the complete and fully annotated genome sequence of strain Kaplan of PRV, determined by Pacific Biosciences RSII long-read sequencing technology.
摘要
伪狂犬病病毒（PRV）是一种嗜神经性疱疹病毒，可引起猪的奥耶斯基氏病。PRV毒株被广泛用作绘制神经回路的跨突触示踪剂。我们在此展示通过太平洋生物科学公司RSII长读长测序技术测定的PRV卡普兰毒株的完整且经过充分注释的基因组序列。
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本文引用的文献
1
Immunization of pigs with an attenuated pseudorabies virus recombinant expressing the haemagglutinin of pandemic swine origin H1N1 influenza A virus.猪用表达大流行猪源 H1N1 流感病毒血凝素的减毒伪狂犬病病毒重组疫苗免疫。
J Gen Virol. 2014 Apr;95(Pt 4):948-959. doi: 10.1099/vir.0.059253-0. Epub 2014 Jan 15.
2
Oral immunization of wild boar and domestic pigs with attenuated live vaccine protects against Pseudorabies virus infection.经弱毒活疫苗口服免疫野猪和家猪可预防伪狂犬病病毒感染。
Vet Microbiol. 2012 Dec 28;161(1-2):20-5. doi: 10.1016/j.vetmic.2012.07.002. Epub 2012 Jul 10.
3
Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing.利用单分子实时 DNA 测序技术对 DNA 甲基转移酶特异性进行表征。
Nucleic Acids Res. 2012 Feb;40(4):e29. doi: 10.1093/nar/gkr1146. Epub 2011 Dec 7.
4
A wide extent of inter-strain diversity in virulent and vaccine strains of alphaherpesviruses.α疱疹病毒毒力株和疫苗株之间存在广泛的株间多样性。
PLoS Pathog. 2011 Oct;7(10):e1002282. doi: 10.1371/journal.ppat.1002282. Epub 2011 Oct 13.
5
A dual infection pseudorabies virus conditional reporter approach to identify projections to collateralized neurons in complex neural circuits.一种双感染伪狂犬病病毒条件报告方法，用于鉴定复杂神经回路中向侧枝化神经元的投射。
PLoS One. 2011;6(6):e21141. doi: 10.1371/journal.pone.0021141. Epub 2011 Jun 16.
6
Growth, physicochemical properties, and morphogenesis of Chinese wild-type PRV Fa and its gene-deleted mutant strain PRV SA215.中国野生型 PRV Fa 及其基因缺失突变株 PRV SA215 的生长、理化特性和形态发生。
Virol J. 2011 Jun 4;8:272. doi: 10.1186/1743-422X-8-272.
7
A flexible and efficient template format for circular consensus sequencing and SNP detection.一种用于环形一致性测序和 SNP 检测的灵活高效的模板格式。
Nucleic Acids Res. 2010 Aug;38(15):e159. doi: 10.1093/nar/gkq543. Epub 2010 Jun 22.
8
Calcium imaging of neuronal circuits in vivo using a circuit-tracing pseudorabies virus.使用一种电路追踪伪狂犬病病毒对体内神经元回路进行钙成像。
Cold Spring Harb Protoc. 2010 Apr;2010(4):pdb.prot5410. doi: 10.1101/pdb.prot5410.
9
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J Biomed Biotechnol. 2009;2009:361795. doi: 10.1155/2009/361795. Epub 2009 Jul 14.
10
Genetically timed, activity-sensor and rainbow transsynaptic viral tools.基因定时、活动传感器和彩虹跨突触病毒工具。
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