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外显子组测序作为临床疑似肌膜蛋白病患者的二线诊断方法。

Exome sequencing as a second-tier diagnostic approach for clinically suspected dysferlinopathy patients.

作者信息

Bartoli Marc, Desvignes Jean-Pierre, Nicolas Levy, Martin Krahn

机构信息

Aix Marseille Université, INSERM, GMGF, UMR_S 910, 13385, Marseille, France; APHM, Département de Génétique Médicale, Hôpital Timone Enfants, Marseille, 13385, France.

出版信息

Muscle Nerve. 2014 Dec;50(6):1007-10. doi: 10.1002/mus.24344. Epub 2014 Oct 30.

Abstract

INTRODUCTION

Autosomal recessive muscular dystrophies are heterogeneous genetic disorders, with 39 genes currently implicated. Genetic diagnosis using targeted single-gene analysis by Sanger sequencing yields negative results in 10-20% of samples, warranting clinical re-evaluation and time-consuming testing of additional genes. This applies to dysferlinopathies caused by mutations in the gene encoding dysferlin (DYSF), which presents mainly as limb-girdle muscular dystrophy (LGMD) or distal myopathy.

METHODS

We evaluated exome sequencing associated with data filtering for selected genes as a second-tier approach for genetic diagnosis in a cohort of 37 patients with an initial negative result on targeted DYSF analysis.

RESULTS

Exome sequencing allowed for establishing (16%) or suggesting (8%) the molecular diagnosis by implicating other known LGMD or distal myopathy genes or by revealing DYSF mutations previously missed using mutation-screening techniques with incomplete detection yields.

CONCLUSIONS

Exome sequencing associated with data filtering constitutes an efficient second-tier analysis for genes implicated in LGMD or distal myopathies.

摘要

引言

常染色体隐性遗传性肌营养不良症是一类异质性的基因疾病,目前已涉及39个基因。采用桑格测序法进行靶向单基因分析的基因诊断在10%-20%的样本中会得出阴性结果,这就需要进行临床重新评估,并对其他基因进行耗时的检测。这适用于由编码dysferlin(DYSF)的基因突变引起的dysferlin病,该病主要表现为肢带型肌营养不良症(LGMD)或远端肌病。

方法

我们评估了外显子组测序结合对选定基因的数据筛选,作为对37例靶向DYSF分析初始结果为阴性的患者进行基因诊断的二线方法。

结果

外显子组测序通过涉及其他已知的LGMD或远端肌病基因,或通过揭示先前使用检测效率不完整的突变筛查技术遗漏的DYSF突变,得以确立(16%)或提示(8%)分子诊断。

结论

外显子组测序结合数据筛选构成了对涉及LGMD或远端肌病的基因进行有效二线分析的方法。

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