Sekar Aarthi, Merritt Christopher, Baugh Loren, Stuart Kenneth, Myler Peter J
Seattle Biomedical Research Institute, 307 Westlake Avenue N., Seattle WA 98109-5219, USA.
Seattle Biomedical Research Institute, 307 Westlake Avenue N., Seattle WA 98109-5219, USA; Department of Global Health, University of Washington, Seattle, WA 98195, USA.
Mol Biochem Parasitol. 2014 Aug;196(1):9-11. doi: 10.1016/j.molbiopara.2014.07.005. Epub 2014 Jul 23.
Base J is a DNA modification found in the genome of Trypanosoma brucei and all other kinetoplastids analyzed, where it replaces a small fraction of Ts, mainly in telomeric and chromosome-internal transcription initiation and termination regions. The synthesis of base J is a two-step process whereby a specific T is converted to HOMedU (hydroxymethyldeoxyuridine) and subsequently glucosylated to generate J. The thymidine hydroxylases (JPB1 and JBP2) that catalyze the first step have been characterized, but the identity of the glucosyltransferase catalyzing the second step has proven elusive. Recent bioinformatic analysis by Iyer et al. (Nucleic Acids Res 2013;41:7635) suggested that Tb927.10.6900 encodes the glucosyltransferase (HmdUGT) responsible for converting HOMedU to J in T. brucei. We now present experimental evidence to validate this hypothesis; null mutants of Tb927.10.6900 are unable to synthesize base J. Orthologues from related kinetoplastids show only modest conservation, with several insertion sequences found in those from Leishmania and related genera.
碱基J是在布氏锥虫以及所有其他已分析的动基体生物基因组中发现的一种DNA修饰,它取代了一小部分胸腺嘧啶(T),主要存在于端粒和染色体内部的转录起始和终止区域。碱基J的合成是一个两步过程,即特定的T先转化为羟甲基脱氧尿苷(HOMedU),随后进行糖基化生成J。催化第一步反应的胸腺嘧啶羟化酶(JPB1和JBP2)已得到鉴定,但催化第二步反应的糖基转移酶的身份一直难以确定。Iyer等人最近的生物信息学分析(《核酸研究》2013年;41:7635)表明,Tb927.10.6900编码负责将布氏锥虫中的HOMedU转化为J的糖基转移酶(HmdUGT)。我们现在提供实验证据来验证这一假设;Tb927.10.6900的缺失突变体无法合成碱基J。来自相关动基体生物的直系同源物仅显示出适度的保守性,在利什曼原虫及相关属的直系同源物中发现了几个插入序列。