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某些二卤代苯酚中的卤键:在晶体工程中的应用。

Halogen bonds in some dihalogenated phenols: applications to crystal engineering.

机构信息

Solid State and Structural Chemistry Unit, Indian Institute of Science , C. V. Raman Avenue, Bangalore 560 012, India.

出版信息

IUCrJ. 2013 Oct 18;1(Pt 1):49-60. doi: 10.1107/S2052252513025657. eCollection 2014 Jan 1.

Abstract

3,4-Dichlorophenol (1) crystallizes in the tetragonal space group I41/a with a short axis of 3.7926 (9) Å. The structure is unique in that both type I and type II Cl⋯Cl interactions are present, these contact types being distinguished by the angle ranges of the respective C-Cl⋯Cl angles. The present study shows that these two types of contacts are utterly different. The crystal structures of 4-bromo-3-chlorophenol (2) and 3-bromo-4-chlorophenol (3) have been determined. The crystal structure of (2) is isomorphous to that of (1) with the Br atom in the 4-position participating in a type II interaction. However, the monoclinic P21/c packing of compound (3) is different; while the structure still has O-H⋯O hydrogen bonds, the tetramer O-H⋯O synthon seen in (1) and (2) is not seen. Rather than a type I Br⋯Br interaction which would have been mandated if (3) were isomorphous to (1) and (2), Br forms a Br⋯O contact wherein its electrophilic character is clearly evident. Crystal structures of the related compounds 4-chloro-3-iodophenol (4) and 3,5-dibromophenol (5) were also determined. A computational survey of the structural landscape was undertaken for (1), (2) and (3), using a crystal structure prediction protocol in space groups P21/c and I41/a with the COMPASS26 force field. While both tetragonal and monoclinic structures are energetically reasonable for all compounds, the fact that (3) takes the latter structure indicates that Br prefers type II over type I contacts. In order to differentiate further between type I and type II halogen contacts, which being chemically distinct are expected to have different distance fall-off properties, a variable-temperature crystallography study was performed on compounds (1), (2) and (4). Length variations with temperature are greater for type II contacts compared with type I. The type II Br⋯Br interaction in (2) is stronger than the corresponding type II Cl⋯Cl interaction in (1), leading to elastic bending of the former upon application of mechanical stress, which contrasts with the plastic deformation of (1). The observation of elastic deformation in (2) is noteworthy; in that it finds an explanation based on the strengths of the respective halogen bonds, it could also be taken as a good starting model for future property design. Cl/Br isostructurality is studied with the Cambridge Structural Database and it is indicated that this isostructurality is based on shape and size similarity of Cl and Br, rather than arising from any chemical resemblance.

摘要

3,4-二氯苯酚(1)结晶为四方晶系 I41/a,其短轴为 3.7926 (9) Å。该结构的独特之处在于存在类型 I 和类型 II 的 Cl⋯Cl 相互作用,这两种接触类型通过各自 C-Cl⋯Cl 角度的范围来区分。本研究表明,这两种类型的接触完全不同。已确定 4-溴-3-氯苯酚(2)和 3-溴-4-氯苯酚(3)的晶体结构。(2)的晶体结构与(1)同构,其中 Br 原子位于 4 位,参与了类型 II 的相互作用。然而,化合物(3)的单斜 P21/c 堆积方式不同;虽然结构仍然存在 O-H⋯O 氢键,但在(1)和(2)中看到的四聚体 O-H⋯O 合成子却没有出现。如果(3)与(1)和(2)同构,Br 不会形成 Br⋯Br 相互作用,而是形成 Br⋯O 接触,其亲电性特征显而易见。还确定了相关化合物 4-氯-3-碘苯酚(4)和 3,5-二溴苯酚(5)的晶体结构。使用晶体结构预测协议在 P21/c 和 I41/a 空间群中对(1)、(2)和(3)进行了结构景观的计算调查,使用 COMPASS26 力场。虽然所有化合物的四方和单斜结构在能量上都是合理的,但(3)采用后一种结构表明 Br 更喜欢类型 II 而不是类型 I 相互作用。为了进一步区分化学性质不同的类型 I 和类型 II 卤化物相互作用,预计它们具有不同的距离衰减特性,对化合物(1)、(2)和(4)进行了变温晶体学研究。与类型 I 相互作用相比,类型 II 相互作用的长度随温度的变化更大。(2)中的类型 II Br⋯Br 相互作用强于(1)中的相应类型 II Cl⋯Cl 相互作用,导致前者在施加机械应力时发生弹性弯曲,这与(1)的塑性变形形成对比。(2)中观察到的弹性变形值得注意;基于各自卤化物键的强度,它可以作为未来性能设计的良好起点模型。使用剑桥结构数据库研究了 Cl/Br 同晶结构,表明这种同晶结构基于 Cl 和 Br 的形状和大小相似,而不是源于任何化学相似性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0732/4104968/4b25d679c17d/m-01-00049-fig1.jpg

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