Baqader Noor O, Radulovic Marko, Crawford Mark, Stoeber Kai, Godovac-Zimmermann Jasminka
Division of Medicine, Center for Nephrology, University College London , Royal Free Campus, Rowland Hill Street, London NW3 2PF, United Kingdom.
J Proteome Res. 2014 Oct 3;13(10):4398-423. doi: 10.1021/pr500638h. Epub 2014 Sep 3.
We have used a subcellular spatial razor approach based on LC-MS/MS-based proteomics with SILAC isotope labeling to determine changes in protein abundances in the nuclear and cytoplasmic compartments of human IMR90 fibroblasts subjected to mild oxidative stress. We show that response to mild tert-butyl hydrogen peroxide treatment includes redistribution between the nucleus and cytoplasm of numerous proteins not previously associated with oxidative stress. The 121 proteins with the most significant changes encompass proteins with known functions in a wide variety of subcellular locations and of cellular functional processes (transcription, signal transduction, autophagy, iron metabolism, TCA cycle, ATP synthesis) and are consistent with functional networks that are spatially dispersed across the cell. Both nuclear respiratory factor 2 and the proline regulatory axis appear to contribute to the cellular metabolic response. Proteins involved in iron metabolism or with iron/heme as a cofactor as well as mitochondrial proteins are prominent in the response. Evidence suggesting that nuclear import/export and vesicle-mediated protein transport contribute to the cellular response was obtained. We suggest that measurements of global changes in total cellular protein abundances need to be complemented with measurements of the dynamic subcellular spatial redistribution of proteins to obtain comprehensive pictures of cellular function.
我们采用了一种基于液相色谱-串联质谱(LC-MS/MS)蛋白质组学和稳定同位素标记氨基酸细胞培养技术(SILAC)的亚细胞空间筛选方法,以确定轻度氧化应激下人IMR90成纤维细胞核和细胞质区室中蛋白质丰度的变化。我们发现,对轻度叔丁基过氧化氢处理的反应包括许多先前与氧化应激无关的蛋白质在细胞核和细胞质之间的重新分布。变化最显著的121种蛋白质包括在各种亚细胞位置和细胞功能过程(转录、信号转导、自噬、铁代谢、三羧酸循环、ATP合成)中具有已知功能的蛋白质,并且与在细胞中空间分散的功能网络一致。核呼吸因子2和脯氨酸调节轴似乎都对细胞代谢反应有贡献。参与铁代谢或含有铁/血红素作为辅因子的蛋白质以及线粒体蛋白质在反应中很突出。获得了表明核输入/输出和囊泡介导的蛋白质运输有助于细胞反应的证据。我们建议,对细胞总蛋白质丰度的全局变化的测量需要辅以对蛋白质动态亚细胞空间重新分布的测量,以获得细胞功能的全面图景。