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通过生物分子扩散行为对其长距离相互作用进行实验检测:数值研究

Experimental detection of long-distance interactions between biomolecules through their diffusion behavior: numerical study.

作者信息

Nardecchia Ilaria, Spinelli Lionel, Preto Jordane, Gori Matteo, Floriani Elena, Jaeger Sebastien, Ferrier Pierre, Pettini Marco

机构信息

CNRS Centre de Physique Théorique UMR7332, 13288 Marseille, France and Centre d'Immunologie de Marseille-Luminy, 13288 Marseille, France and CNRS, UMR7280, Marseille, France and INSERM, U1104, Marseille, France.

Centre d'Immunologie de Marseille-Luminy, 13288 Marseille, France and CNRS, UMR7280, Marseille, France and INSERM, U1104, Marseille, France.

出版信息

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Aug;90(2):022703. doi: 10.1103/PhysRevE.90.022703. Epub 2014 Aug 6.

Abstract

The dynamical properties and diffusive behavior of a collection of mutually interacting particles are numerically investigated for two types of long-range interparticle interactions: Coulomb-electrostatic and dipole-electrodynamic. It is shown that when the particles are uniformly distributed throughout the accessible space, the self-diffusion coefficient is always lowered by the considered interparticle interactions, irrespective of their attractive or repulsive character. This fact is also confirmed by a simple model to compute the correction to the Brownian diffusion coefficient due to the interactions among the particles. These interactions are also responsible for the onset of dynamical chaos and an associated chaotic diffusion which still follows an Einstein-Fick-like law for the mean-square displacement as a function of time. Transitional phenomena are observed for Coulomb-electrostatic (repulsive) and dipole-electrodynamic (attractive) interactions considered both separately and in competition. The outcomes reported in this paper clearly indicate a feasible experimental method to probe the activation of resonant electrodynamic interactions among biomolecules.

摘要

针对两种长程粒子间相互作用

库仑 - 静电相互作用和偶极 - 电动力学相互作用,对一组相互作用粒子的动力学性质和扩散行为进行了数值研究。结果表明,当粒子均匀分布在整个可及空间时,无论所考虑的粒子间相互作用是吸引还是排斥性质,自扩散系数总是会因这些相互作用而降低。这一事实也通过一个简单模型得到证实,该模型用于计算由于粒子间相互作用对布朗扩散系数的修正。这些相互作用还导致了动力学混沌的出现以及相关的混沌扩散,而这种混沌扩散对于均方位移随时间的变化仍遵循类似爱因斯坦 - 菲克定律。分别以及在竞争情况下考虑库仑 - 静电(排斥)和偶极 - 电动力学(吸引)相互作用时,都观察到了过渡现象。本文所报告的结果清楚地表明了一种可行的实验方法,用于探测生物分子间共振电动力学相互作用的激活。

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