Fenley Andrew T, Henriksen Niel M, Muddana Hari S, Gilson Michael K
Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego , 9500 Gilman Drive, La Jolla, California 92093-0736, United States.
J Chem Theory Comput. 2014 Sep 9;10(9):4069-4078. doi: 10.1021/ct5004109. Epub 2014 Jul 23.
We used microsecond time scale molecular dynamics simulations to compute, at high precision, binding enthalpies for cucurbit[7]uril (CB7) with eight guests in aqueous solution. The results correlate well with experimental data from previously published isothermal titration calorimetry studies, and decomposition of the computed binding enthalpies by interaction type provides plausible mechanistic insights. Thus, dispersion interactions appear to play a key role in stabilizing these complexes, due at least in part to the fact that their packing density is greater than that of water. On the other hand, strongly favorable Coulombic interactions between the host and guests are compensated by unfavorable solvent contributions, leaving relatively modest electrostatic contributions to the binding enthalpies. The better steric fit of the aliphatic guests into the circular host appears to explain why their binding enthalpies tend to be more favorable than those of the more planar aromatic guests. The present calculations also bear on the validity of the simulation force field. Somewhat unexpectedly, the TIP3P water yields better agreement with experiment than the TIP4P-Ew water model, although the latter is known to replicate the properties of pure water more accurately. More broadly, the present results demonstrate the potential for computational calorimetry to provide atomistic explanations for thermodynamic observations.
我们使用微秒时间尺度的分子动力学模拟,高精度地计算了葫芦[7]脲(CB7)与八种客体在水溶液中的结合焓。结果与先前发表的等温滴定量热法研究的实验数据高度相关,并且通过相互作用类型对计算得到的结合焓进行分解,提供了合理的机理见解。因此,色散相互作用似乎在稳定这些配合物中起关键作用,这至少部分归因于它们的堆积密度大于水的堆积密度这一事实。另一方面,主体与客体之间强烈有利的库仑相互作用被不利的溶剂贡献所补偿,使得对结合焓的静电贡献相对较小。脂肪族客体与环状主体更好的空间契合似乎解释了为什么它们的结合焓往往比更平面的芳香族客体的结合焓更有利。目前的计算也涉及模拟力场的有效性。有点出乎意料的是,尽管已知TIP4P-Ew水模型能更准确地复制纯水的性质,但TIP3P水与实验的吻合度比TIP4P-Ew水模型更好。更广泛地说,目前的结果证明了计算量热法为热力学观测提供原子水平解释的潜力。