• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

葫芦脲与不带电荷的极性客体高亲和力配合物中包装、分散、静电和溶剂化的作用。

The Role of Packing, Dispersion, Electrostatics, and Solvation in High-Affinity Complexes of Cucurbit[n]urils with Uncharged Polar Guests.

机构信息

Institute of Nanotechnology, Karlsruhe Institute of Technology, Hermann-von-Helmholtz Platz 1, 76344, Eggenstein-Leopoldshafen, Germany.

Mulliken Center for Theoretical Chemistry, Institute of Physical and Theoretical Chemistry, University of Bonn, Beringstraße 4, 53115, Bonn, Germany.

出版信息

Chemistry. 2022 Jul 6;28(38):e202200529. doi: 10.1002/chem.202200529. Epub 2022 May 25.

DOI:10.1002/chem.202200529
PMID:35612260
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9401061/
Abstract

The rationalization of non-covalent binding trends is both of fundamental interest and provides new design concepts for biomimetic molecular systems. Cucurbit[n]urils (CBn) are known for a long time as the strongest synthetic binders for a wide range of (bio)organic compounds in water. However, their host-guest binding mechanism remains ambiguous despite their symmetric and simple macrocyclic structure and the wealth of literature reports. We herein report experimental thermodynamic binding parameters (ΔG, ΔH, TΔS) for CB7 and CB8 with a set of hydroxylated adamantanes, di-, and triamantanes as uncharged, rigid, and spherical/ellipsoidal guests. Binding geometries and binding energy decomposition were obtained from high-level theory computations. This study reveals that neither London dispersion interactions, nor electronic energies or entropic factors are decisive, selectivity-controlling factors for CBn complexes. In contrast, peculiar host-related solvation effects were identified as the major factor for rationalizing the unique behavior and record-affinity characteristics of cucurbit[n]urils.

摘要

非共价键相互作用趋势的合理化具有重要的理论意义,并为仿生分子体系提供了新的设计理念。葫芦[n]脲(CBn)作为一种广泛的(生物)有机化合物在水中的最强合成配体,已经被人们熟知了很长时间。然而,尽管它们具有对称且简单的大环结构和丰富的文献报道,但其主客体结合机制仍然不明确。在此,我们报告了 CB7 和 CB8 与一系列羟基化金刚烷、二金刚烷和三金刚烷作为不带电荷、刚性和球形/椭圆形客体的实验热力学结合参数(ΔG、ΔH、TΔS)。通过高精度理论计算得到了结合几何形状和结合能分解。这项研究表明,对于 CBn 配合物,伦敦色散相互作用、电子能量或熵因子都不是决定选择性的控制因素。相比之下,特殊的主体相关溶剂化效应被确定为合理化葫芦[n]脲独特行为和记录亲和力特征的主要因素。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0d37/9401061/24596b77dc6b/CHEM-28-0-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0d37/9401061/6960f891540f/CHEM-28-0-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0d37/9401061/b7f3efe6fc90/CHEM-28-0-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0d37/9401061/0f10ea4a1bb3/CHEM-28-0-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0d37/9401061/b378beb5b6e6/CHEM-28-0-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0d37/9401061/24596b77dc6b/CHEM-28-0-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0d37/9401061/6960f891540f/CHEM-28-0-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0d37/9401061/b7f3efe6fc90/CHEM-28-0-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0d37/9401061/0f10ea4a1bb3/CHEM-28-0-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0d37/9401061/b378beb5b6e6/CHEM-28-0-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0d37/9401061/24596b77dc6b/CHEM-28-0-g002.jpg

相似文献

1
The Role of Packing, Dispersion, Electrostatics, and Solvation in High-Affinity Complexes of Cucurbit[n]urils with Uncharged Polar Guests.葫芦脲与不带电荷的极性客体高亲和力配合物中包装、分散、静电和溶剂化的作用。
Chemistry. 2022 Jul 6;28(38):e202200529. doi: 10.1002/chem.202200529. Epub 2022 May 25.
2
Complexation of Eu(III) with cucurbit[n]uril, n = 5 and 7: a thermodynamic and structural study.铕(III)与葫芦[n]脲(n = 5和7)的络合作用:一项热力学和结构研究。
Dalton Trans. 2015 Mar 7;44(9):4246-58. doi: 10.1039/c4dt03623a.
3
New ultrahigh affinity host-guest complexes of cucurbit[7]uril with bicyclo[2.2.2]octane and adamantane guests: thermodynamic analysis and evaluation of M2 affinity calculations.新型超高亲和主体-客体配合物葫芦[7]脲与二环[2.2.2]辛烷和金刚烷客体:热力学分析和 M2 亲和力计算评估。
J Am Chem Soc. 2011 Mar 16;133(10):3570-81. doi: 10.1021/ja109904u. Epub 2011 Feb 22.
4
Release of high-energy water as an essential driving force for the high-affinity binding of cucurbit[n]urils.高能水的释放是瓜环高亲和力结合的必要驱动力。
J Am Chem Soc. 2012 Sep 19;134(37):15318-23. doi: 10.1021/ja303309e. Epub 2012 Sep 10.
5
Cucurbit[8]uril and blue-box: high-energy water release overwhelms electrostatic interactions.葫芦脲与蓝盒:高能量水释放克服静电相互作用。
J Am Chem Soc. 2013 Oct 2;135(39):14879-88. doi: 10.1021/ja407951x. Epub 2013 Sep 24.
6
Correlating solution binding and ESI-MS stabilities by incorporating solvation effects in a confined cucurbit[8]uril system.通过在受限的葫芦脲[8]体系中纳入溶剂化效应来关联溶液结合和 ESI-MS 稳定性。
J Phys Chem B. 2010 Jul 8;114(26):8606-15. doi: 10.1021/jp102933h.
7
Dispersion Interactions in Condensed Phases and inside Molecular Containers.凝聚相及分子容器内部的色散相互作用
Acc Chem Res. 2023 Dec 5;56(23):3451-3461. doi: 10.1021/acs.accounts.3c00523. Epub 2023 Nov 13.
8
Nanomolar Binding of Steroids to Cucurbit[n]urils: Selectivity and Applications.类固醇与葫芦脲的纳摩尔结合:选择性和应用。
J Am Chem Soc. 2016 Oct 5;138(39):13022-13029. doi: 10.1021/jacs.6b07655. Epub 2016 Sep 22.
9
Theoretical Investigation of the Binding of Nucleobases to Cucurbiturils by Dispersion Corrected DFT Approaches.基于色散校正 DFT 方法的对碱基与葫芦脲相互作用的理论研究。
J Phys Chem B. 2017 May 11;121(18):4733-4744. doi: 10.1021/acs.jpcb.7b01808. Epub 2017 May 1.
10
Deciphering the specific high-affinity binding of cucurbit[7]uril to amino acids in water.解析葫芦脲[7]与水中氨基酸的特异高亲和力结合。
J Phys Chem B. 2015 Apr 2;119(13):4628-36. doi: 10.1021/acs.jpcb.5b00743. Epub 2015 Mar 19.

引用本文的文献

1
Melamine-Based Molecularly Imprinted Monoliths Targeting Glyphosate in Aqueous Media: Synthesis and Binding Mechanism Elucidation.用于靶向水介质中草甘膦的三聚氰胺基分子印迹整体柱:合成与结合机制解析
ACS Omega. 2025 May 23;10(22):22412-22425. doi: 10.1021/acsomega.4c06690. eCollection 2025 Jun 10.
2
Distinction and Quantification of Noncovalent Dispersive and Hydrophobic Effects.非共价分散作用和疏水作用的区分与量化
Molecules. 2024 Apr 2;29(7):1591. doi: 10.3390/molecules29071591.
3
Overcoming barriers with non-covalent interactions: supramolecular recognition of adamantyl cucurbit[]uril assemblies for medical applications.

本文引用的文献

1
Molecular Probes, Chemosensors, and Nanosensors for Optical Detection of Biorelevant Molecules and Ions in Aqueous Media and Biofluids.用于在水相介质和生物流体中光学检测生物相关分子和离子的分子探针、化学传感器和纳米传感器。
Chem Rev. 2022 Feb 9;122(3):3459-3636. doi: 10.1021/acs.chemrev.1c00746. Epub 2022 Jan 7.
2
Highly compressible glass-like supramolecular polymer networks.高度可压缩的类玻璃超分子聚合物网络。
Nat Mater. 2022 Jan;21(1):103-109. doi: 10.1038/s41563-021-01124-x. Epub 2021 Nov 25.
3
Robust and Efficient Implicit Solvation Model for Fast Semiempirical Methods.
利用非共价相互作用克服障碍:金刚烷基葫芦[ ]脲组装体在医学应用中的超分子识别
RSC Med Chem. 2023 Dec 6;15(2):433-471. doi: 10.1039/d3md00596h. eCollection 2024 Feb 21.
4
The temperature-dependence of host-guest binding thermodynamics: experimental and simulation studies.主客体结合热力学的温度依赖性:实验与模拟研究
Chem Sci. 2023 Oct 13;14(42):11818-11829. doi: 10.1039/d3sc01975f. eCollection 2023 Nov 1.
5
Cucurbit[7]uril Complexation of Near-Infrared Fluorescent Azobenzene-Cyanine Conjugates.葫芦脲对近红外荧光吖啶橙-菁染料化合物的超分子组装。
Molecules. 2022 Aug 25;27(17):5440. doi: 10.3390/molecules27175440.
6
In Search of Preferential Macrocyclic Hosts for Sulfur Mustard Sensing and Recognition: A Computational Investigation through the New Composite Method rSCAN-3c of the Key Factors Influencing the Host-Guest Interactions.寻找用于硫芥传感和识别的优先大环主体:通过新的复合方法rSCAN-3c对影响主客体相互作用的关键因素进行的计算研究。
Nanomaterials (Basel). 2022 Jul 22;12(15):2517. doi: 10.3390/nano12152517.
稳健高效的隐式溶剂化模型用于快速半经验方法。
J Chem Theory Comput. 2021 Jul 13;17(7):4250-4261. doi: 10.1021/acs.jctc.1c00471. Epub 2021 Jun 29.
4
Efficient Quantum Chemical Calculation of Structure Ensembles and Free Energies for Nonrigid Molecules.高效量子化学计算非刚性分子的结构集合和自由能。
J Phys Chem A. 2021 May 20;125(19):4039-4054. doi: 10.1021/acs.jpca.1c00971. Epub 2021 Mar 10.
5
rSCAN-3c: A "Swiss army knife" composite electronic-structure method.rSCAN-3c:一种“瑞士军刀”式的复合电子结构方法。
J Chem Phys. 2021 Feb 14;154(6):064103. doi: 10.1063/5.0040021.
6
Single-Point Hessian Calculations for Improved Vibrational Frequencies and Rigid-Rotor-Harmonic-Oscillator Thermodynamics.单点 Hessian 计算提高振动频率和刚性转子谐振子热力学。
J Chem Theory Comput. 2021 Mar 9;17(3):1701-1714. doi: 10.1021/acs.jctc.0c01306. Epub 2021 Feb 8.
7
Teaching old indicators even more tricks: binding affinity measurements with the guest-displacement assay (GDA).教旧指标更多技巧:用客体置换法(GDA)进行结合亲和力测量。
Chem Commun (Camb). 2020 Jun 18;56(49):6620-6623. doi: 10.1039/d0cc01841d.
8
London Dispersion and Hydrogen-Bonding Interactions in Bulky Molecules: The Case of Diadamantyl Ether Complexes.伦敦色散和氢键相互作用在庞大分子中的研究:二金刚烷基醚配合物为例。
Chemistry. 2020 Aug 21;26(47):10817-10825. doi: 10.1002/chem.202001444. Epub 2020 Jul 27.
9
Robust Atomistic Modeling of Materials, Organometallic, and Biochemical Systems.材料、有机金属和生化系统的强大原子建模。
Angew Chem Int Ed Engl. 2020 Sep 1;59(36):15665-15673. doi: 10.1002/anie.202004239. Epub 2020 May 18.
10
Preferential binding of unsaturated hydrocarbons in aryl-bisimidazolium·cucurbit[8]uril complexes furbishes evidence for small-molecule π-π interactions.芳基双咪唑鎓·葫芦[8]脲配合物中不饱和烃的优先结合为小分子π-π相互作用提供了证据。
Chem Sci. 2019 Oct 17;10(44):10240-10246. doi: 10.1039/c9sc03282g. eCollection 2019 Nov 28.