Suppr超能文献

一种合作性复制酶在益生元化学系统中的起源与传播。

The origin and spread of a cooperative replicase in a prebiotic chemical system.

作者信息

Shay Julie A, Huynh Christopher, Higgs Paul G

机构信息

Department of Physics and Astronomy, McMaster University, Hamilton, Ontario, Canada L8S 4M1.

Department of Physics and Astronomy, McMaster University, Hamilton, Ontario, Canada L8S 4M1.

出版信息

J Theor Biol. 2015 Jan 7;364:249-59. doi: 10.1016/j.jtbi.2014.09.019. Epub 2014 Sep 22.

Abstract

The origin of life requires the emergence of a system of autocatalytic polymers such as RNA. We consider a trans-acting replicase that catalyses replication of a template (either a copy of itself or another sequence). Our model includes alternating plus/minus strand replication where only the plus strand is a catalyst. Prebiotic chemistry generates random sequences and allows for non-catalysed, template-directed synthesis of new strands. These chemical reactions are insufficient to sustain replication, but they provide a background in which the first replicase can arise. In the well-mixed case, the minimum value of the catalytic rate parameter k for which a stable replicating state survives scales as 1/f, where f is the fraction of random sequences that are catalysts. When catalysts are rare (f→0), the replicating state is not stable in for any finite k because the replicases are overrun by parasitic templates already present in the prebiotic system, and by additional parasites created by mutation of the catalyst. In contrast, in 2d spatial simulations, the replicating state is stable for moderate k with appropriate values of the local diffusion constant. We calculate the probability of spread of the replicating state from a single isolated catalyst. This occurs in a parameter range that is narrower than that in which existing replicators are stable. The 2d model uses 'Two׳s Company' rules, where two molecules on a site may replicate, but crowding occurs when three molecules are on one site. A mean-field theory is presented which predicts the most important results of the spatial model. Our results emphasize that the origin of replication is a spatially-localized stochastic transition between a 'dead' state controlled by prebiotic chemistry and a 'living' state controlled by autocatalytic replication.

摘要

生命的起源需要诸如RNA之类的自催化聚合物系统的出现。我们考虑一种反式作用复制酶,它催化模板(自身的拷贝或另一个序列)的复制。我们的模型包括正负链交替复制,其中只有正链是催化剂。前生物化学产生随机序列,并允许新链的非催化、模板导向合成。这些化学反应不足以维持复制,但它们提供了一个背景,使得第一个复制酶能够出现。在充分混合的情况下,稳定复制状态能够存活的催化速率参数k的最小值按1/f缩放,其中f是作为催化剂的随机序列的比例。当催化剂很稀少时(f→0),对于任何有限的k,复制状态都不稳定,因为复制酶会被前生物系统中已经存在的寄生模板以及由催化剂突变产生的额外寄生模板所淹没。相比之下,在二维空间模拟中,对于具有适当局部扩散常数的中等k值,复制状态是稳定的。我们计算了从单个孤立催化剂开始复制状态传播的概率。这种情况发生的参数范围比现有复制体稳定的参数范围更窄。二维模型使用“二人成伴”规则,即一个位点上的两个分子可以复制,但当一个位点上有三个分子时就会出现拥挤现象。我们提出了一种平均场理论,该理论预测了空间模型的最重要结果。我们的结果强调,复制的起源是在前生物化学控制的“死亡”状态和自催化复制控制的“生命”状态之间的一种空间局部化随机转变。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验