Shah Vismay, de Bouter Jonathan, Pauli Quinn, Tupper Andrew S, Higgs Paul G
Origins Institute and Department of Physics and Astronomy, McMaster University, Hamilton, Ontario, CA L8S 4L8, USA.
Origins Institute and Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario, CA L8S 4L8, USA.
Life (Basel). 2019 Aug 7;9(3):65. doi: 10.3390/life9030065.
In RNA-World scenarios for the origin of life, replication is catalyzed by polymerase ribozymes. Replicating RNA systems are subject to invasion by non-functional parasitic strands. It is well-known that there are two ways to avoid the destruction of the system by parasites: spatial clustering in models with limited diffusion, or group selection in protocells. Here, we compare computational models of replication in spatial models and protocells as closely as possible in order to determine the relative importance of these mechanisms in the RNA World. For the survival of the polymerases, the replication rate must be greater than a minimum threshold value, , and the mutation rate in replication must be less than a maximum value, , which is known as the error threshold. For the protocell models, we find that is substantially lower and is substantially higher than for the equivalent spatial models; thus, the survival of polymerases is much easier in protocells than on surfaces. The results depend on the maximum number of strands permitted in one protocell or one lattice site in the spatial model, and on whether replication is limited by the supply of monomers or the population size of protocells. The substantial advantages that are seen in the protocell models relative to the spatial models are robust to changing these details. Thus, cooperative polymerases with limited accuracy would have found it much easier to operate inside lipid compartments, and this suggests that protocells may have been a very early step in the development of life. We consider cases where parasites have an equal replication rate to polymerases, and cases where parasites multiply twice as fast as polymerases. The advantage of protocell models over spatial models is increased when the parasites multiply faster.
在生命起源的RNA世界假说中,复制由聚合酶核酶催化。RNA复制系统容易受到无功能寄生链的入侵。众所周知,有两种方法可以避免系统被寄生虫破坏:在扩散受限的模型中进行空间聚类,或在原始细胞中进行群体选择。在这里,我们尽可能紧密地比较空间模型和原始细胞中复制的计算模型,以确定这些机制在RNA世界中的相对重要性。对于聚合酶的存活,复制速率必须大于最小阈值, ,并且复制中的突变率必须小于最大值, ,这被称为错误阈值。对于原始细胞模型,我们发现 比等效的空间模型要低得多, 则要高得多;因此,聚合酶在原始细胞中的存活比在表面上要容易得多。结果取决于空间模型中一个原始细胞或一个晶格位点允许的最大链数,以及复制是受单体供应还是原始细胞群体大小的限制。相对于空间模型,原始细胞模型中看到的显著优势对于改变这些细节是稳健的。因此,精度有限的合作聚合酶会发现在脂质隔室内操作要容易得多,这表明原始细胞可能是生命发展中非常早期的一步。我们考虑了寄生虫与聚合酶具有相同复制速率的情况,以及寄生虫繁殖速度是聚合酶两倍的情况。当寄生虫繁殖更快时,原始细胞模型相对于空间模型的优势会增加。