• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利：CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法，用中文像聊天一样搜索，搜遍4000万医学文献。AI智能推荐，让科研检索更轻松。

立即免费搜索

文件翻译

保留排版，准确专业，支持PDF/Word/PPT等文件格式，支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述，25分钟生成高质量综述，智能提取关键信息，辅助科研写作。

立即免费体验

检测大豆中与驯化相关性状潜在的单核苷酸多态性

Detecting SNPs underlying domestication-related traits in soybean.

作者信息

Li Ying-Hui, Reif Jochen C, Jackson Scott A, Ma Yan-Song, Chang Ru-Zhen, Qiu Li-Juan

出版信息

BMC Plant Biol. 2014 Sep 26;14:251. doi: 10.1186/s12870-014-0251-1.

DOI:10.1186/s12870-014-0251-1
PMID:25258093
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4180965/
Abstract

BACKGROUND

Cultivated soybean (Glycine max) experienced a severe genetic bottleneck during its domestication and a further loss in diversity during its subsequent selection. Here, a panel of 65 wild (G. soja) and 353 cultivated accessions was genotyped at 552 single-nucleotide polymorphism loci to search for signals of selection during and after domestication.

RESULTS

The wild and cultivated populations were well differentiated from one another. Application of the Fst outlier test revealed 64 loci showing evidence for selection. Of these, 35 related to selection during domestication, while the other 29 likely gradually became monomorphic as a result of prolonged selection during post domestication. Two of the SNP locus outliers were associated with testa color.

CONCLUSIONS

Identifying genes controlling domestication-related traits is important for maintaining the diversity of crops. SNP locus outliers detected by a combined forward genetics and population genetics approach can provide markers with utility for the conservation of wild accessions and for trait improvement in the cultivated genepool.

摘要

背景

栽培大豆（Glycine max）在驯化过程中经历了严重的遗传瓶颈，并且在随后的选择过程中多样性进一步丧失。在此，对一组由65份野生大豆（G. soja）和353份栽培品种组成的样本在552个单核苷酸多态性位点进行了基因分型，以寻找驯化过程中和驯化后选择的信号。

结果

野生种群和栽培种群彼此之间有明显分化。Fst异常值检验显示有64个位点有选择的证据。其中，35个与驯化过程中的选择有关，而另外29个可能由于驯化后长期选择而逐渐变得单态。两个单核苷酸多态性位点异常值与种皮颜色有关。

结论

鉴定控制驯化相关性状的基因对于维持作物多样性很重要。通过正向遗传学和群体遗传学相结合的方法检测到的单核苷酸多态性位点异常值可为保护野生种质和改良栽培基因库中的性状提供有用的标记。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b8c/4180965/74fc88dd3128/12870_2014_251_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b8c/4180965/f7c1cdcecb24/12870_2014_251_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b8c/4180965/77f9839d0826/12870_2014_251_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b8c/4180965/fe9341c2a36c/12870_2014_251_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b8c/4180965/4b00836613a8/12870_2014_251_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b8c/4180965/74fc88dd3128/12870_2014_251_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b8c/4180965/f7c1cdcecb24/12870_2014_251_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b8c/4180965/77f9839d0826/12870_2014_251_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b8c/4180965/fe9341c2a36c/12870_2014_251_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b8c/4180965/4b00836613a8/12870_2014_251_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b8c/4180965/74fc88dd3128/12870_2014_251_Fig5_HTML.jpg

相似文献

1
Detecting SNPs underlying domestication-related traits in soybean.检测大豆中与驯化相关性状潜在的单核苷酸多态性
BMC Plant Biol. 2014 Sep 26;14:251. doi: 10.1186/s12870-014-0251-1.
2
Genetic diversity in domesticated soybean (Glycine max) and its wild progenitor (Glycine soja) for simple sequence repeat and single-nucleotide polymorphism loci.大豆（Glycine max）及其野生祖先（Glycine soja）在简单重复序列和单核苷酸多态性位点的遗传多样性。
New Phytol. 2010 Oct;188(1):242-53. doi: 10.1111/j.1469-8137.2010.03344.x. Epub 2010 Jul 6.
3
Domestication footprints anchor genomic regions of agronomic importance in soybeans.驯化印记定位了大豆中具有重要农艺性状的基因组区域。
New Phytol. 2016 Jan;209(2):871-84. doi: 10.1111/nph.13626. Epub 2015 Oct 19.
4
Genetic dissection of yield-related traits via genome-wide association analysis across multiple environments in wild soybean (Glycine soja Sieb. and Zucc.).通过全基因组关联分析在多个环境下对野生大豆（Glycine soja Sieb. and Zucc.）的产量相关性状进行遗传剖析。
Planta. 2020 Jan 6;251(2):39. doi: 10.1007/s00425-019-03329-6.
5
Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing.全基因组重测序揭示大豆驯化和改良的分子特征。
BMC Genomics. 2013 Aug 28;14:579. doi: 10.1186/1471-2164-14-579.
6
Construction and comparison of three reference-quality genome assemblies for soybean.构建并比较三种参考质量的大豆基因组组装。
Plant J. 2019 Dec;100(5):1066-1082. doi: 10.1111/tpj.14500. Epub 2019 Oct 28.
7
A single origin and moderate bottleneck during domestication of soybean (Glycine max): implications from microsatellites and nucleotide sequences.大豆驯化过程中的单一起源和适度瓶颈：微卫星和核苷酸序列的启示。
Ann Bot. 2010 Sep;106(3):505-14. doi: 10.1093/aob/mcq125. Epub 2010 Jun 21.
8
Genetic dissection of domestication-related traits in soybean through genotyping-by-sequencing of two interspecific mapping populations.通过对两个种间图谱群体的测序分型进行全基因组关联分析，解析大豆驯化相关性状的遗传基础。
Theor Appl Genet. 2019 Apr;132(4):1195-1209. doi: 10.1007/s00122-018-3272-6. Epub 2019 Jan 3.
9
The transcriptomic signature of developing soybean seeds reveals the genetic basis of seed trait adaptation during domestication.发育中的大豆种子的转录组特征揭示了驯化过程中种子性状适应的遗传基础。
Plant J. 2016 Jun;86(6):530-44. doi: 10.1111/tpj.13181. Epub 2016 Jun 20.
10
Identification and Validation of Candidate Genes Associated with Domesticated and Improved Traits in Soybean.鉴定和验证与大豆驯化和改良特性相关的候选基因。
Plant Genome. 2016 Jul;9(2). doi: 10.3835/plantgenome2015.09.0090.

引用本文的文献

1
Limited genetic diversity found among genotypes of the Entada landrace (, (Welw.) Chessman) from Ethiopia.在来自埃塞俄比亚的Entada地方品种（(Welw.) Chessman）的基因型中发现有限的遗传多样性。
Front Plant Sci. 2024 Sep 9;15:1336461. doi: 10.3389/fpls.2024.1336461. eCollection 2024.
2
Population structure and genetic diversity characterization of soybean for seed longevity.大豆种子长寿的群体结构和遗传多样性特征。
PLoS One. 2022 Dec 6;17(12):e0278631. doi: 10.1371/journal.pone.0278631. eCollection 2022.
3
The Contributes to Resistance to Soybean Cyst Nematode Race 4 in .

本文引用的文献

1
Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing.全基因组重测序揭示大豆驯化和改良的分子特征。
BMC Genomics. 2013 Aug 28;14:579. doi: 10.1186/1471-2164-14-579.
2
Allele-specific marker development and selection efficiencies for both flavonoid 3'-hydroxylase and flavonoid 3',5'-hydroxylase genes in soybean subgenus soja.大豆亚属 flavonoid 3'-羟化酶和 flavonoid 3',5'-羟化酶基因的等位基因特异性标记的开发和选择效率。
Theor Appl Genet. 2013 Jun;126(6):1445-55. doi: 10.1007/s00122-013-2063-3. Epub 2013 Mar 6.
3
SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar).
其对……中大豆胞囊线虫4号生理小种的抗性有贡献。 （你提供的原文表述不完整，这是根据现有内容尽量完整准确翻译的结果）
Front Plant Sci. 2022 Jul 4;13:939763. doi: 10.3389/fpls.2022.939763. eCollection 2022.
4
Population Genetics Revealed a New Locus That Underwent Positive Selection in Barley.群体遗传学揭示了大麦中经历正选择的新基因座。
Int J Mol Sci. 2019 Jan 8;20(1):202. doi: 10.3390/ijms20010202.
5
SNP Discovery Using a Pangenome: Has the Single Reference Approach Become Obsolete?利用泛基因组进行单核苷酸多态性（SNP）发现：单一参考方法是否已过时？
Biology (Basel). 2017 Mar 11;6(1):21. doi: 10.3390/biology6010021.
6
Transcript Polymorphism Rates in Soybean Seed Tissue Are Increased in a Single Transformant of .大豆种子组织中的转录本多态性率在……的单个转化体中增加。
Int J Plant Genomics. 2016;2016:1562041. doi: 10.1155/2016/1562041. Epub 2016 Nov 29.
7
Neurogenomics and the role of a large mutational target on rapid behavioral change.神经基因组学以及大突变靶点在快速行为变化中的作用。
Biol Direct. 2016 Nov 8;11(1):60. doi: 10.1186/s13062-016-0162-1.
8
Identification and Validation of Loci Governing Seed Coat Color by Combining Association Mapping and Bulk Segregation Analysis in Soybean.通过关联作图和混合分离分析相结合鉴定和验证大豆种皮颜色相关基因座
PLoS One. 2016 Jul 12;11(7):e0159064. doi: 10.1371/journal.pone.0159064. eCollection 2016.
9
Molecular phylogeny and dynamic evolution of disease resistance genes in the legume family.豆科植物中抗病基因的分子系统发育与动态进化
BMC Genomics. 2016 May 26;17:402. doi: 10.1186/s12864-016-2736-9.
10
SNP identification and marker assay development for high-throughput selection of soybean cyst nematode resistance.用于大豆胞囊线虫抗性高通量选择的单核苷酸多态性（SNP）鉴定及标记检测开发
BMC Genomics. 2015 Apr 18;16(1):314. doi: 10.1186/s12864-015-1531-3.
SNP 芯片揭示了大西洋鲑鱼（Salmo salar）自然分布范围内全基因组的地理和潜在适应性分化模式。
Mol Ecol. 2013 Feb;22(3):532-51. doi: 10.1111/mec.12003. Epub 2012 Sep 12.
4
Genome scanning for detecting adaptive genes along environmental gradients in the Japanese conifer, Cryptomeria japonica.对日本柳杉（Cryptomeria japonica）适应环境梯度的基因进行基因组扫描。
Heredity (Edinb). 2012 Dec;109(6):349-60. doi: 10.1038/hdy.2012.50. Epub 2012 Aug 29.
5
Comparative population genomics of maize domestication and improvement.玉米驯化和改良的比较群体基因组学。
Nat Genet. 2012 Jun 3;44(7):808-11. doi: 10.1038/ng.2309.
6
Evidence of selection on fatty acid biosynthetic genes during the evolution of cultivated sunflower.脂肪酸生物合成基因在栽培向日葵进化过程中受到选择的证据。
Theor Appl Genet. 2012 Sep;125(5):897-907. doi: 10.1007/s00122-012-1881-z. Epub 2012 May 12.
7
Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes.对 50 份栽培稻和野生稻进行重测序，得到了可用于鉴定农艺重要基因的标记。
Nat Biotechnol. 2011 Dec 11;30(1):105-11. doi: 10.1038/nbt.2050.
8
Outlier SNPs show more genetic structure between two Bay of Fundy metapopulations of Atlantic salmon than do neutral SNPs.外显单核苷酸多态性（SNP）在芬迪湾两个大西洋鲑鱼亚种群间的遗传结构上的表现，比中性 SNP 更为明显。
Mol Ecol Resour. 2011 Mar;11 Suppl 1:254-67. doi: 10.1111/j.1755-0998.2010.02952.x.
9
Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges.单核苷酸多态性在非模式生物群体遗传学中的应用：新的机遇与挑战。
Mol Ecol Resour. 2011 Mar;11 Suppl 1:123-36. doi: 10.1111/j.1755-0998.2010.02943.x. Epub 2011 Jan 10.
10
Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection.对 31 个野生和栽培大豆基因组进行重测序，鉴定遗传多样性和选择模式。
Nat Genet. 2010 Dec;42(12):1053-9. doi: 10.1038/ng.715. Epub 2010 Nov 14.