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参与糖胺聚糖降解的深海细菌烟酸芽孢杆菌菌株JAM F8的基因组序列草图

Draft Genome Sequence of a Deep-Sea Bacterium, Bacillus niacini Strain JAM F8, Involved in the Degradation of Glycosaminoglycans.

作者信息

Kurata Atsushi, Nishimura Midori, Kishimoto Noriaki, Kobayashi Tohru

机构信息

Department of Applied Biological Chemistry, Graduate School of Agriculture, Kindai University, Nara, Japan

Department of Applied Biological Chemistry, Graduate School of Agriculture, Kindai University, Nara, Japan.

出版信息

Genome Announc. 2014 Oct 2;2(5):e00983-14. doi: 10.1128/genomeA.00983-14.

DOI:10.1128/genomeA.00983-14
PMID:25278530
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4183874/
Abstract

Here, we report the draft genome sequence of Bacillus niacini JAM F8, which was newly isolated from deep-sea sediment at a depth of 2,759 m from the Izu-Ogasawara Trench. An array of genes related to degradation of glycosaminoglycans in this bacterium was identified by whole-genome analysis.

摘要

在此,我们报告了从伊豆小笠原海沟2759米深处的深海沉积物中新分离出的烟酸芽孢杆菌JAM F8的基因组序列草图。通过全基因组分析鉴定出该细菌中一系列与糖胺聚糖降解相关的基因。

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本文引用的文献

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A novel hyaluronidase produced by Bacillus sp. A50.一种由芽孢杆菌属A50产生的新型透明质酸酶。
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Molecular engineering of glycosaminoglycan chemistry for biomolecule delivery.用于生物分子递送的糖胺聚糖化学的分子工程
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MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes.MetaGeneAnnotator:检测核糖体结合位点的物种特异性模式,以在未知原核生物和噬菌体基因组中进行精确的基因预测。
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The RAST Server: rapid annotations using subsystems technology.RAST服务器:使用子系统技术进行快速注释。
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