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用于生物流体和基质中蛋白质去除、预分级和富集的基于液相的分离系统,用于深入蛋白质组学分析——2011 - 2014年期间的最新进展

Liquid phase based separation systems for depletion, prefractionation, and enrichment of proteins in biological fluids and matrices for in-depth proteomics analysis-An update covering the period 2011-2014.

作者信息

Puangpila Chanida, Mayadunne Erandi, El Rassi Ziad

机构信息

Department of Chemistry, Oklahoma State University, Stillwater, OK, USA.

出版信息

Electrophoresis. 2015 Jan;36(1):238-52. doi: 10.1002/elps.201400434. Epub 2014 Nov 24.

DOI:10.1002/elps.201400434
PMID:25287967
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4485988/
Abstract

This review article expands on the previous one (S. Selvaraju and Z. El Rassi, Electrophoresis 2012, 33, 74-88) by reviewing pertinent literature in the period extending from early 2011 to present. As the previous review article, the present one is concerned with proteomic sample preparation (e.g., depletion of high-abundance proteins, reduction of the protein dynamic concentration range, enrichment of a particular subproteome), and the subsequent chromatographic and/or electrophoretic prefractionation prior to peptide separation and identification by LC-MS/MS. This review article, however, is distinguished from its earlier version by expanding on capturing/enriching subphosphoproteomes by immobilized metal affinity chromatography and metal oxide affinity chromatography. Seventy-seven papers published in the period extending from mid-2011 to the present have been reviewed. By no means this review article is exhaustive, given the fact that its aim is to give a concise treatment of the latest developments in the field.

摘要

这篇综述文章通过回顾2011年初至今这段时间的相关文献,对前一篇文章(S. Selvaraju和Z. El Rassi,《电泳》,2012年,第33卷,第74 - 88页)进行了扩展。与前一篇综述文章一样,本文关注蛋白质组学样品制备(例如,去除高丰度蛋白质、缩小蛋白质动态浓度范围、富集特定亚蛋白质组),以及在通过液相色谱 - 串联质谱(LC - MS/MS)进行肽段分离和鉴定之前的后续色谱和/或电泳预分级分离。然而,这篇综述文章与早期版本的不同之处在于,它扩展了通过固定金属亲和色谱和金属氧化物亲和色谱捕获/富集亚磷酸化蛋白质组的内容。本文回顾了2011年年中至今发表的77篇论文。鉴于其目的是对该领域的最新进展进行简要论述,这篇综述文章绝非详尽无遗。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1eda/4485988/cc792316b020/nihms699240f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1eda/4485988/46df708fde1d/nihms699240f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1eda/4485988/1d02ee211b31/nihms699240f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1eda/4485988/cc792316b020/nihms699240f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1eda/4485988/46df708fde1d/nihms699240f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1eda/4485988/1d02ee211b31/nihms699240f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1eda/4485988/cc792316b020/nihms699240f3.jpg

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