Jia Feiyu, Liu Chongxi, Zhao Junwei, Zhang Yuejing, Li Lianjie, Zhou Shuyu, Shen Yue, Wang Xiangjing, Xiang Wensheng
Key Laboratory of Agriculture Biological Functional Gene of Heilongjiang Provincial Education Committee, Northeast Agricultural University, No. 59 Mucai Street, Xiangfang District, Harbin, 150030, People's Republic of China.
Antonie Van Leeuwenhoek. 2015 Jan;107(1):15-21. doi: 10.1007/s10482-014-0299-9. Epub 2014 Oct 8.
A novel actinomycete, designated strain NEAU-C3(T), was isolated from volcanic sediment collected from Longwan, Jilin province, north China and characterized using a polyphasic approach. The organism was found to have morphological and chemotaxonomic characteristics typical of the members of the genus Streptomyces. EzTaxon-e analysis of the 16S rRNA gene sequence indicated strain NEAU-C3(T) to be most closely related to Streptomyces hygroscopicus subsp. ossamyceticus JCM 4965(T) (97.7 % sequence similarity) and Streptomyces torulosus JCM 4872(T) (97.7 %). Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain NEAU-C3(T) belongs within the genus Streptomyces and forms a separate subclade, an association that was supported by a bootstrap value of 72 % in the neighbour-joining tree and also recovered with the maximum-likelihood algorithm. The DNA-DNA hybridization values between strain NEAU-C3(T) and the two most closely related type strains were low enough to justify the assignment of the strain to a novel species. On the basis of these phenotypic, phylogenetic and chemotaxonomic characteristics, it is concluded that strain NEAU-C3(T) represents a novel species of the genus Streptomyces, for which the name Streptomyces vulcanius sp. nov. is proposed. The type strain is NEAU-C3(T) (=CGMCC 4.7177(T)=DSM 42139(T)).
从中国北方吉林省龙湾采集的火山沉积物中分离出一株新型放线菌,命名为菌株NEAU-C3(T),并采用多相分类法对其进行了鉴定。发现该菌株具有链霉菌属成员典型的形态和化学分类学特征。对16S rRNA基因序列进行的EzTaxon-e分析表明,菌株NEAU-C3(T)与吸水链霉菌井冈霉素亚种JCM 4965(T)(序列相似性为97.7%)和浅紫灰链霉菌JCM 4872(T)(97.7%)关系最为密切。基于16S rRNA基因序列的系统发育分析表明,菌株NEAU-C3(T)属于链霉菌属,并形成一个单独的亚分支,在邻接法树中,该分支得到72%的自展值支持,最大似然算法也得到相同结果。菌株NEAU-C3(T)与两个关系最密切的模式菌株之间的DNA-DNA杂交值足够低,足以证明该菌株应归为一个新物种。基于这些表型、系统发育和化学分类学特征,得出结论:菌株NEAU-C3(T)代表链霉菌属的一个新物种,为此提出新名称火山链霉菌(Streptomyces vulcanius sp. nov.)。模式菌株为NEAU-C3(T)(=CGMCC 4.7177(T)=DSM 42139(T))。