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散发性肌萎缩侧索硬化症中的靶向外显子捕获与测序

Targeted exon capture and sequencing in sporadic amyotrophic lateral sclerosis.

作者信息

Couthouis Julien, Raphael Alya R, Daneshjou Roxana, Gitler Aaron D

机构信息

Department of Genetics, Stanford University School of Medicine, Stanford, California, United States of America.

出版信息

PLoS Genet. 2014 Oct 9;10(10):e1004704. doi: 10.1371/journal.pgen.1004704. eCollection 2014 Oct.

Abstract

Amyotrophic lateral sclerosis (ALS) is a devastating neurodegenerative disease that results in progressive degeneration of motor neurons, ultimately leading to paralysis and death. Approximately 10% of ALS cases are familial, with the remaining 90% of cases being sporadic. Genetic studies in familial cases of ALS have been extremely informative in determining the causative mutations behind ALS, especially as the same mutations identified in familial ALS can also cause sporadic disease. However, the cause of ALS in approximately 30% of familial cases and in the majority of sporadic cases remains unknown. Sporadic ALS cases represent an underutilized resource for genetic information about ALS; therefore, we undertook a targeted sequencing approach of 169 known and candidate ALS disease genes in 242 sporadic ALS cases and 129 matched controls to try to identify novel variants linked to ALS. We found a significant enrichment in novel and rare variants in cases versus controls, indicating that we are likely identifying disease associated mutations. This study highlights the utility of next generation sequencing techniques combined with functional studies and rare variant analysis tools to provide insight into the genetic etiology of a heterogeneous sporadic disease.

摘要

肌萎缩侧索硬化症(ALS)是一种毁灭性的神经退行性疾病,会导致运动神经元逐渐退化,最终导致瘫痪和死亡。大约10%的ALS病例为家族性,其余90%为散发性。对家族性ALS病例的基因研究在确定ALS背后的致病突变方面极具参考价值,特别是因为在家族性ALS中发现的相同突变也可导致散发性疾病。然而,约30%的家族性病例和大多数散发性病例中ALS的病因仍不明。散发性ALS病例是关于ALS遗传信息的未充分利用资源;因此,我们对242例散发性ALS病例和129例匹配对照中的169个已知和候选ALS疾病基因进行了靶向测序,试图识别与ALS相关的新变异。我们发现病例组中新变异和罕见变异显著多于对照组,表明我们可能识别出了与疾病相关的突变。这项研究凸显了将下一代测序技术与功能研究及罕见变异分析工具相结合,以深入了解异质性散发性疾病遗传病因的实用性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3315/4191946/801021ca0558/pgen.1004704.g001.jpg

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