从马铃薯叶际分离的产N-酰基高丝氨酸内酯的假单胞菌属菌株StFLB209的全基因组序列
Complete Genome Sequence of N-Acylhomoserine Lactone-Producing Pseudomonas sp. Strain StFLB209, Isolated from Potato Phyllosphere.
作者信息
Morohoshi Tomohiro, Kato Taro, Someya Nobutaka, Ikeda Tsukasa
机构信息
Department of Material and Environmental Chemistry, Graduate School of Engineering, Utsunomiya University, Utsunomiya, Tochigi, Japan
Department of Material and Environmental Chemistry, Graduate School of Engineering, Utsunomiya University, Utsunomiya, Tochigi, Japan.
出版信息
Genome Announc. 2014 Oct 16;2(5):e01037-14. doi: 10.1128/genomeA.01037-14.
Abstract
Pseudomonas sp. strain StFLB209 is isolated from the potato leaf and produces N-acylhomoserine lactone quorum-sensing signal compounds. Here, we present the 6,332,373-bp complete genome sequence of StFLB209, with a G+C content of 60.7%, which carries 5,598 protein-coding genes, 6 rRNA operons, and 69 tRNA genes.
摘要
假单胞菌属菌株StFLB209从马铃薯叶片中分离得到，可产生N-酰基高丝氨酸内酯群体感应信号化合物。在此，我们展示了StFLB209的6,332,373碱基对的完整基因组序列，其G+C含量为60.7%，包含5,598个蛋白质编码基因、6个rRNA操纵子和69个tRNA基因。
相似文献
1
Complete Genome Sequence of N-Acylhomoserine Lactone-Producing Pseudomonas sp. Strain StFLB209, Isolated from Potato Phyllosphere.从马铃薯叶际分离的产N-酰基高丝氨酸内酯的假单胞菌属菌株StFLB209的全基因组序列
Genome Announc. 2014 Oct 16;2(5):e01037-14. doi: 10.1128/genomeA.01037-14.
2
The ppuI-rsaL-ppuR quorum-sensing system regulates cellular motility, pectate lyase activity, and virulence in potato opportunistic pathogen Pseudomonas sp. StFLB209.ppuI-rsaL-ppuR群体感应系统调控马铃薯机会致病菌假单胞菌属StFLB209的细胞运动性、果胶酸裂解酶活性和毒力。
Biosci Biotechnol Biochem. 2015;79(4):673-80. doi: 10.1080/09168451.2014.988679. Epub 2014 Dec 8.
3
Complete Genome Sequence of Chryseobacterium sp. Strain StRB126, an N-Acylhomoserine Lactone-Degrading Bacterium Isolated from Potato Root.从马铃薯根部分离出的一株N-酰基高丝氨酸内酯降解细菌——金黄杆菌属菌株StRB126的全基因组序列
Genome Announc. 2014 Sep 25;2(5):e00952-14. doi: 10.1128/genomeA.00952-14.
4
Novel quorum quenching enzymes identified from draft genome of sp. TAS13.从sp. TAS13的基因组草图中鉴定出的新型群体感应淬灭酶。
Genom Data. 2017 Feb 21;12:22-23. doi: 10.1016/j.gdata.2017.02.001. eCollection 2017 Jun.
5
Complete genome sequence of Burkholderia sp. Strain GG4, a betaproteobacterium that reduces 3-oxo-N-acylhomoserine lactones and produces different N-acylhomoserine lactones.伯克霍尔德氏菌 GG4 菌株的全基因组序列，该菌是一种β变形菌，可还原 3-氧代-N-酰基高丝氨酸内酯并产生不同的 N-酰基高丝氨酸内酯。
J Bacteriol. 2012 Nov;194(22):6317. doi: 10.1128/JB.01578-12.
6
Distribution of N-Acylhomoserine Lactone-Producing Fluorescent Pseudomonads in the Phyllosphere and Rhizosphere of Potato (Solanum tuberosum L.).在马铃薯（Solanum tuberosum L.）的叶围和根围中 N-酰基高丝氨酸内酯产生型荧光假单胞菌的分布。
Microbes Environ. 2009;24(4):305-14. doi: 10.1264/jsme2.me09155.
7
Draft Genome Sequence of Alicycliphilus sp. B1, an N-Acylhomoserine Lactone-Producing Bacterium, Isolated from Activated Sludge.从活性污泥中分离得到的产N-酰基高丝氨酸内酯细菌 Alicycliphilus sp. B1 的基因组序列草图
Genome Announc. 2015 May 14;3(3):e00424-15. doi: 10.1128/genomeA.00424-15.
8
Genome sequence of Ruegeria sp. strain KLH11, an N-acylhomoserine lactone-producing bacterium isolated from the marine sponge Mycale laxissima. Ruegeria sp. 菌株 KLH11 的基因组序列，该菌株是从海洋海绵 Mycale laxissima 中分离得到的一种产生 N-酰基高丝氨酸内酯的细菌。
J Bacteriol. 2011 Sep;193(18):5011-2. doi: 10.1128/JB.05556-11. Epub 2011 Jul 8.
9
Whole-genome sequence of N-acylhomoserine lactone-synthesizing and -degrading Acinetobacter sp. strain GG2.N-酰基高丝氨酸内酯合成和降解不动杆菌 GG2 全基因组序列。
J Bacteriol. 2012 Nov;194(22):6318. doi: 10.1128/JB.01579-12.
10
Unravelling the genome of long chain N-acylhomoserine lactone-producing Acinetobacter sp. strain GG2 and identification of its quorum sensing synthase gene.解析产长链N-酰基高丝氨酸内酯的不动杆菌属菌株GG2的基因组并鉴定其群体感应合成酶基因。
Front Microbiol. 2015 Apr 14;6:240. doi: 10.3389/fmicb.2015.00240. eCollection 2015.
引用本文的文献
1
Instances of erroneous DNA barcoding of metazoan invertebrates: Are universal cox1 gene primers too "universal"?后生动物无脊椎动物 DNA 条形码错误鉴定实例：通用 cox1 基因引物是否过于“通用”？
PLoS One. 2018 Jun 22;13(6):e0199609. doi: 10.1371/journal.pone.0199609. eCollection 2018.
本文引用的文献
1
Genetic diversity and ecological evaluation of fluorescent pseudomonads isolated from the leaves and roots of potato plants.从马铃薯植株叶片和根系中分离的荧光假单胞菌的遗传多样性和生态评价。
Microbes Environ. 2012;27(2):122-6. doi: 10.1264/jsme2.me11237.
2
Distribution of N-Acylhomoserine Lactone-Producing Fluorescent Pseudomonads in the Phyllosphere and Rhizosphere of Potato (Solanum tuberosum L.).在马铃薯（Solanum tuberosum L.）的叶围和根围中 N-酰基高丝氨酸内酯产生型荧光假单胞菌的分布。
Microbes Environ. 2009;24(4):305-14. doi: 10.1264/jsme2.me09155.
3
MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes.MetaGeneAnnotator：检测核糖体结合位点的物种特异性模式，以在未知原核生物和噬菌体基因组中进行精确的基因预测。
DNA Res. 2008 Dec;15(6):387-96. doi: 10.1093/dnares/dsn027. Epub 2008 Oct 21.
4
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.RNAmmer：核糖体RNA基因的一致性快速注释
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
5
Regulation of quorum sensing in Pseudomonas.铜绿假单胞菌群体感应的调控
FEMS Microbiol Rev. 2006 Mar;30(2):274-91. doi: 10.1111/j.1574-6976.2005.00012.x.
6
Quorum sensing: cell-to-cell communication in bacteria.群体感应：细菌间的细胞间通讯
Annu Rev Cell Dev Biol. 2005;21:319-46. doi: 10.1146/annurev.cellbio.21.012704.131001.
7
Genome sequencing in microfabricated high-density picolitre reactors.微制造高密度皮升反应器中的基因组测序
Nature. 2005 Sep 15;437(7057):376-80. doi: 10.1038/nature03959. Epub 2005 Jul 31.
8
Identification and characterization of an N-acylhomoserine lactone-dependent quorum-sensing system in Pseudomonas putida strain IsoF.恶臭假单胞菌菌株IsoF中N-酰基高丝氨酸内酯依赖性群体感应系统的鉴定与表征
Appl Environ Microbiol. 2002 Dec;68(12):6371-82. doi: 10.1128/AEM.68.12.6371-6382.2002.
9
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.tRNAscan-SE：用于改进基因组序列中转运RNA基因检测的程序。
Nucleic Acids Res. 1997 Mar 1;25(5):955-64. doi: 10.1093/nar/25.5.955.
10
Basic local alignment search tool.基本局部比对搜索工具
J Mol Biol. 1990 Oct 5;215(3):403-10. doi: 10.1016/S0022-2836(05)80360-2.
Zotero 插件