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从活性污泥中分离得到的产N-酰基高丝氨酸内酯细菌 Alicycliphilus sp. B1 的基因组序列草图

Draft Genome Sequence of Alicycliphilus sp. B1, an N-Acylhomoserine Lactone-Producing Bacterium, Isolated from Activated Sludge.

作者信息

Okutsu Noriya, Morohoshi Tomohiro, Ikeda Tsukasa

机构信息

Department of Material and Environmental Chemistry, Graduate School of Engineering, Utsunomiya University, Utsunomiya, Tochigi, Japan.

出版信息

Genome Announc. 2015 May 14;3(3):e00424-15. doi: 10.1128/genomeA.00424-15.

DOI:10.1128/genomeA.00424-15
PMID:25977425
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4432331/
Abstract

We report here the draft genome sequence of Alicycliphilus sp. B1, isolated from activated sludge in a wastewater treatment plant of an electronic component factory as an N-acylhomoserine lactone-producing strain. The draft genome is 7,465,959 bp in length, with 59 large contigs. About 7,391 protein-coding genes, 82 tRNAs, and 13 rRNAs are predicted from this assembly.

摘要

我们在此报告从一家电子元件厂污水处理厂的活性污泥中分离出的一株产N-酰基高丝氨酸内酯的嗜环脂菌属B1菌株的基因组草图序列。该基因组草图长度为7,465,959 bp，有59个大的重叠群。从该组装结果预测出约7,391个蛋白质编码基因、82个tRNA和13个rRNA。

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引用本文的文献

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Identification of Quorum-Sensing Signal Molecules and a Biosynthetic Gene in Alicycliphilus sp. Isolated from Activated Sludge.从活性污泥中分离出的嗜环脂菌中群体感应信号分子及生物合成基因的鉴定
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本文引用的文献

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Production and degradation of N-acylhomoserine lactone quorum sensing signal molecules in bacteria isolated from activated sludge.从活性污泥中分离出的细菌中N-酰基高丝氨酸内酯群体感应信号分子的产生与降解
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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.非杂交、基于长读长 SMRT 测序数据的完成微生物基因组组装。
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The presence and role of bacterial quorum sensing in activated sludge.细菌群体感应在活性污泥中的存在和作用。
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Genome sequences of Alicycliphilus denitrificans strains BC and K601T.嗜酸可脱硫单胞菌 BC 株和 K601T 株的基因组序列。
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Isolation and characterization of Alicycliphilus denitrificans strain BC, which grows on benzene with chlorate as the electron acceptor.以氯酸盐作为电子受体在苯上生长的反硝化 Alicycliphilus denitrificans 菌株 BC 的分离与特性研究
Appl Environ Microbiol. 2008 Nov;74(21):6672-81. doi: 10.1128/AEM.00835-08. Epub 2008 Sep 12.
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RNAmmer: consistent and rapid annotation of ribosomal RNA genes.RNAmmer：核糖体RNA基因的一致性快速注释
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Quorum sensing: cell-to-cell communication in bacteria.群体感应：细菌间的细胞间通讯
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9
Alicycliphilus denitrificans gen. nov., sp. nov., a cyclohexanol-degrading, nitrate-reducing beta-proteobacterium.反硝化 Alicycliphilus 菌属，新属，新种，一种可降解环己醇、还原硝酸盐的β-变形菌。
Int J Syst Evol Microbiol. 2003 Jan;53(Pt 1):147-152. doi: 10.1099/ijs.0.02276-0.
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tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.tRNAscan-SE：用于改进基因组序列中转运RNA基因检测的程序。
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