Yesylevskyy Semen O, Demchenko Alexander P
Institute of Physics, National Academy of Sciences of Ukraine, Prospect Nauky, 46, Kiev, 03039, Ukraine,
Methods Mol Biol. 2015;1232:291-306. doi: 10.1007/978-1-4939-1752-5_20.
Asymmetric lipid composition of the cell membranes plays an important role in the multitude of important biological functions. Much less is known, however, about the distribution and dynamics of cholesterol in asymmetric biological membranes. In this work we show how this issue could be addressed computationally by molecular dynamics simulations. The influence of the lipid head group charge, acyl chain saturation, spontaneous membrane curvature and the surface tension of the membrane on cholesterol distribution in asymmetric lipid bilayers is investigated. Four asymmetric bilayers containing DOPC, DOPS, DSPC, or DSPS lipids, were simulated on the time scale extended to tens of microseconds. We show that cholesterol strongly prefers anionic lipids to neutral and saturated lipid tails to unsaturated with distribution ratio ~0.4-0.6. Multiple flip-flop transitions of cholesterol were observed directly and their mean times range from 350 to 2,000 ns. It was shown that the distribution of cholesterol in the asymmetric bilayer depends not only on the type of lipids but also on the local membrane curvature and the surface tension. The geometric shape of spontaneously curved asymmetric bilayer changes dramatically in the presence of cholesterol. The membrane curvature becomes less homogeneous with large patches of flattened regions interleaved by rather sharp bends.
细胞膜的不对称脂质组成在众多重要生物学功能中发挥着重要作用。然而,关于胆固醇在不对称生物膜中的分布和动态,人们了解得要少得多。在这项工作中,我们展示了如何通过分子动力学模拟以计算方式解决这个问题。研究了脂质头部基团电荷、酰基链饱和度、自发膜曲率和膜表面张力对不对称脂质双层中胆固醇分布的影响。在扩展到数十微秒的时间尺度上模拟了包含DOPC、DOPS、DSPC或DSPS脂质的四种不对称双层。我们表明,胆固醇强烈偏好阴离子脂质而非中性脂质,偏好饱和脂质尾部而非不饱和脂质,分布比例约为0.4 - 0.6。直接观察到了胆固醇的多次翻转转换,其平均时间范围为350至2000纳秒。结果表明,胆固醇在不对称双层中的分布不仅取决于脂质类型,还取决于局部膜曲率和表面张力。在存在胆固醇的情况下,自发弯曲的不对称双层的几何形状会发生显著变化。膜曲率变得不那么均匀,出现大片扁平区域,并穿插着相当尖锐的弯曲。