Choi Jun-Ho, Cho Minhaeng
Department of Chemistry, Korea University, Seoul 136-713, South Korea.
J Chem Phys. 2014 Oct 21;141(15):154502. doi: 10.1063/1.4897638.
Graph theory in mathematics and computer science is the study of graphs that are structures with pairwise connections between any objects. Here, the spectral graph theory and molecular dynamics simulation method are used to describe both morphological variation of ion aggregates in high salt solutions and ion effects on water hydrogen-bonding network structure. From the characteristic value analysis of the adjacency matrices that are graph theoretical representations of ion clusters, ion networks, and water H-bond structures, we obtained the ensemble average eigenvalue spectra revealing intricate connectivity and topology of ion aggregate structure that can be classified as either ion cluster or ion network. We further show that there is an isospectral relationship between the eigenvalue spectra of ion networks in high KSCN solutions and those of water H-bonding networks. This reveals the isomorphic relationship between water H-bond structure and ion-ion network structure in KSCN solution. On the other hand, the ion clusters formed in high NaCl solutions are shown to be graph-theoretically and morphologically different from the ion network structures in KSCN solutions. These observations support the bifurcation hypothesis on large ion aggregate growth mechanism via either ion cluster or ion network formation. We thus anticipate that the present spectral graph analyses of ion aggregate structures and their effects on water H-bonding network structures in high salt solutions can provide important information on the specific ion effects on water structures and possibly protein stability resulting from protein-water interactions.
数学和计算机科学中的图论是对图的研究,图是任意对象之间具有成对连接的结构。在此,光谱图论和分子动力学模拟方法被用于描述高盐溶液中离子聚集体的形态变化以及离子对水氢键网络结构的影响。通过对离子簇、离子网络和水氢键结构的图论表示——邻接矩阵的特征值分析,我们获得了系综平均特征值谱,揭示了可归类为离子簇或离子网络的离子聚集体结构的复杂连通性和拓扑结构。我们进一步表明,高KSCN溶液中离子网络的特征值谱与水氢键网络的特征值谱之间存在等谱关系。这揭示了KSCN溶液中水氢键结构与离子 - 离子网络结构之间的同构关系。另一方面,高NaCl溶液中形成的离子簇在图论和形态上与KSCN溶液中的离子网络结构不同。这些观察结果支持了通过离子簇或离子网络形成的大离子聚集体生长机制的分叉假设。因此,我们预计目前对高盐溶液中离子聚集体结构及其对水氢键网络结构影响的光谱图分析可以提供有关特定离子对水结构以及可能由蛋白质 - 水相互作用导致的蛋白质稳定性影响的重要信息。