综合微生物基因组分析资源。

The integrated microbial genome resource of analysis.

作者信息

Checcucci Alice, Mengoni Alessio

机构信息

Department of Biology, University of Florence, via della Madonna del Piano 6, 50019, Sesto Fiorentino, Firenze, Italy.

出版信息

Methods Mol Biol. 2015;1231:289-95. doi: 10.1007/978-1-4939-1720-4_18.

DOI:10.1007/978-1-4939-1720-4_18

PMID:25343872

Abstract

Integrated Microbial Genomes and Metagenomes (IMG) is a biocomputational system that allows to provide information and support for annotation and comparative analysis of microbial genomes and metagenomes. IMG has been developed by the US Department of Energy (DOE)-Joint Genome Institute (JGI). IMG platform contains both draft and complete genomes, sequenced by Joint Genome Institute and other public and available genomes. Genomes of strains belonging to Archaea, Bacteria, and Eukarya domains are present as well as those of viruses and plasmids. Here, we provide some essential features of IMG system and case study for pangenome analysis.

摘要

综合微生物基因组与宏基因组（IMG）是一个生物计算系统，可用于为微生物基因组和宏基因组的注释及比较分析提供信息与支持。IMG由美国能源部（DOE）联合基因组研究所（JGI）开发。IMG平台包含由联合基因组研究所测序的草图基因组和完整基因组，以及其他公开可用的基因组。古菌、细菌和真核生物域菌株的基因组以及病毒和质粒的基因组均有收录。在此，我们介绍IMG系统的一些基本特征，并进行泛基因组分析的案例研究。