• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

在避免交叉情况下无需计算非绝热耦合的基于轨迹的非绝热分子动力学:偶氮苯中的反式↔顺式光异构化

Trajectory-based nonadiabatic molecular dynamics without calculating nonadiabatic coupling in the avoided crossing case: trans↔cis photoisomerization in azobenzene.

作者信息

Yu Le, Xu Chao, Lei Yibo, Zhu Chaoyuan, Wen Zhenyi

机构信息

Institute of Molecular Science, Department of Applied Chemistry, and Center for Interdisciplinary Molecular Science, National Chiao-Tung University, Hsinchu 300, Taiwan.

出版信息

Phys Chem Chem Phys. 2014 Dec 21;16(47):25883-95. doi: 10.1039/c4cp03498h. Epub 2014 Oct 29.

DOI:10.1039/c4cp03498h
PMID:25354307
Abstract

We develop a novel method to simulate analytical nonadiabatic switching probability based on effective coupling and effective collision energy by using only electronic adiabatic potential energy surfaces and its gradients in the case of avoided crossing types of nonadiabatic transitions. In addition, the present method can keep the same time step for computing both on-the-fly trajectory and nonadiabatic transitions accurately. The present method is most useful for localized nonadiabatic transitions induced by conical intersection. We employ the on-the-fly surface hopping algorithm with an ab initio quantum chemistry calculation to demonstrate a dynamic simulation for photoisomerization in azobenzene. Simulated quantum yield and lifetime converge to 0.39 and 53 femtosecond, respectively (0.33 and 0.81 picosecond) for cis-to-trans (trans-to-cis) photoisomerization with up to 800 (600) sampling trajectories. The present results agree well with those of the experiment, as well as results simulated with use of nonadiabatic coupling within Tully's fewest switching method. The present trajectory-based nonadiabatic molecular dynamics free from nonadiabatic coupling greatly enhances the simulation power of molecular dynamics for large complex chemical systems.

摘要

我们开发了一种新方法,仅利用电子绝热势能面及其梯度,在避免交叉型非绝热跃迁的情况下,基于有效耦合和有效碰撞能量来模拟解析非绝热开关概率。此外,该方法在精确计算实时轨迹和非绝热跃迁时可以保持相同的时间步长。该方法对于由锥形交叉诱导的局域非绝热跃迁最为有用。我们采用实时表面跳跃算法结合从头算量子化学计算来演示偶氮苯光异构化的动态模拟。对于顺 - 反(反 - 顺)光异构化,使用多达800(600)个采样轨迹时,模拟的量子产率和寿命分别收敛到0.39和53飞秒(0.33和0.81皮秒)。目前的结果与实验结果以及使用塔利最少开关方法中的非绝热耦合模拟的结果吻合得很好。这种基于轨迹的无绝热耦合的非绝热分子动力学极大地增强了对大型复杂化学系统分子动力学的模拟能力。

相似文献

1
Trajectory-based nonadiabatic molecular dynamics without calculating nonadiabatic coupling in the avoided crossing case: trans↔cis photoisomerization in azobenzene.在避免交叉情况下无需计算非绝热耦合的基于轨迹的非绝热分子动力学:偶氮苯中的反式↔顺式光异构化
Phys Chem Chem Phys. 2014 Dec 21;16(47):25883-95. doi: 10.1039/c4cp03498h. Epub 2014 Oct 29.
2
Benchmark Performance of Global Switching versus Local Switching for Trajectory Surface Hopping Molecular Dynamics Simulation: Cis↔Trans Azobenzene Photoisomerization.用于轨迹表面跳跃分子动力学模拟的全局切换与局部切换的基准性能:顺式↔反式偶氮苯光异构化
Chemphyschem. 2017 May 19;18(10):1274-1287. doi: 10.1002/cphc.201700049. Epub 2017 Mar 31.
3
Probing the π→π* photoisomerization mechanism of cis-azobenzene by multi-state ab initio on-the-fly trajectory dynamics simulation.通过多态从头算实时轨迹动力学模拟探究顺式偶氮苯的π→π*光异构化机理
Phys Chem Chem Phys. 2015 Jul 21;17(27):17646-60. doi: 10.1039/c5cp02446c. Epub 2015 Jun 17.
4
Performance of TDDFT with and without spin-flip in trajectory surface hopping dynamics: cis-trans azobenzene photoisomerization.含自旋反转和不含自旋反转的含时密度泛函理论在轨迹表面跳跃动力学中的性能:顺反式偶氮苯光致异构化。
Phys Chem Chem Phys. 2018 Oct 7;20(37):24123-24139. doi: 10.1039/c8cp03851a. Epub 2018 Sep 12.
5
Nonadiabatic Ensemble Simulations of cis-Stilbene and cis-Azobenzene Photoisomerization.顺式二苯乙烯和顺式偶氮苯光异构化的非绝热系综模拟
J Chem Theory Comput. 2014 Jan 14;10(1):14-23. doi: 10.1021/ct4009816.
6
Photoisomerization mechanisms from trans, trans-1,4-diphenyl-1,3-butadiene: CASSCF on-the-fly trajectory surface hopping dynamic simulations.反式,反式-1,4-二苯基-1,3-丁二烯的光异构化机制:CASSCF实时轨迹表面跳跃动力学模拟
Phys Chem Chem Phys. 2016 Apr 7;18(13):8971-9. doi: 10.1039/c6cp00514d.
7
Ring Polymer Surface Hopping: Incorporating Nuclear Quantum Effects into Nonadiabatic Molecular Dynamics Simulations.环聚合物表面跳跃:将核量子效应纳入非绝热分子动力学模拟
J Phys Chem Lett. 2017 Jul 6;8(13):3073-3080. doi: 10.1021/acs.jpclett.7b01343. Epub 2017 Jun 22.
8
Nonadiabatic ab initio molecular dynamics of photoisomerization in bridged azobenzene.桥联偶氮苯光异构化的非绝热从头算分子动力学。
J Chem Phys. 2012 Nov 28;137(20):204305. doi: 10.1063/1.4767459.
9
Ab initio nonadiabatic dynamics study of ultrafast radiationless decay over conical intersections illustrated on the Na3F cluster.基于从头算的非绝热动力学研究:以Na3F团簇为例阐述锥形交叉点上的超快无辐射衰变
J Chem Phys. 2006 Jul 14;125(2):24303. doi: 10.1063/1.2209233.
10
Trajectory-based solution of the nonadiabatic quantum dynamics equations: an on-the-fly approach for molecular dynamics simulations.基于轨迹的非绝热量子动力学方程的解法:分子动力学模拟的实时方法。
Phys Chem Chem Phys. 2011 Feb 28;13(8):3231-6. doi: 10.1039/c0cp02175j. Epub 2011 Jan 25.

引用本文的文献

1
Computational Characterization of the DAD Photoisomerization: Functionalization, Protonation, and Solvation Effects.DAD光异构化的计算表征:官能化、质子化和溶剂化效应
J Phys Chem B. 2024 Nov 28;128(47):11587-11596. doi: 10.1021/acs.jpcb.4c05179. Epub 2024 Nov 16.
2
Visible Light Induced Exciton Dynamics and -to- Isomerization in Azobenzene Aggregates: Insights from Surface Hopping/Semiempirical Configuration Interaction Molecular Dynamics Simulations.可见光诱导的偶氮苯聚集体中的激子动力学和光致异构化:表面跳跃/半经验组态相互作用分子动力学模拟的见解
ACS Omega. 2024 Feb 9;9(7):8520-8532. doi: 10.1021/acsomega.3c09900. eCollection 2024 Feb 20.
3
Acid Violet 3: A Base-Activated Water-Soluble Photoswitch.
酸性紫3:一种碱激活的水溶性光开关。
J Phys Chem A. 2024 Feb 1;128(4):785-791. doi: 10.1021/acs.jpca.3c07128. Epub 2024 Jan 18.
4
Fewest switches surface hopping with Baeck-An couplings.具有贝克-安耦合时表面跳跃的开关次数最少。
Open Res Eur. 2022 Mar 9;1:49. doi: 10.12688/openreseurope.13624.2. eCollection 2021.
5
Surface hopping modeling of charge and energy transfer in active environments.活性环境中电荷和能量转移的表面跳跃建模。
Phys Chem Chem Phys. 2023 Mar 22;25(12):8293-8316. doi: 10.1039/d3cp00247k.
6
Excited state non-adiabatic dynamics of large photoswitchable molecules using a chemically transferable machine learning potential.使用化学可转移机器学习势能研究大光致开关分子的激发态非绝热动力学。
Nat Commun. 2022 Jun 15;13(1):3440. doi: 10.1038/s41467-022-30999-w.
7
Aggregation-induced emission spectra of triphenylamine salicylaldehyde derivatives excited-state intramolecular proton transfer revealed by molecular spectral and dynamics simulations.通过分子光谱和动力学模拟揭示的三苯胺水杨醛衍生物的聚集诱导发射光谱及激发态分子内质子转移
RSC Adv. 2021 Nov 18;11(59):37171-37180. doi: 10.1039/d1ra07388e. eCollection 2021 Nov 17.
8
Automatic discovery of photoisomerization mechanisms with nanosecond machine learning photodynamics simulations.通过纳秒级机器学习光动力学模拟自动发现光异构化机制。
Chem Sci. 2021 Mar 10;12(14):5302-5314. doi: 10.1039/d0sc05610c.
9
"On-The-Fly" Non-Adiabatic Dynamics Simulations on Photoinduced Ring-Closing Reaction of a Nucleoside-Based Diarylethene Photoswitch.基于核苷二芳基乙烯光致环闭反应的“飞行中”非绝热动力学模拟。
Molecules. 2021 May 6;26(9):2724. doi: 10.3390/molecules26092724.
10
Machine learning enables long time scale molecular photodynamics simulations.机器学习可实现长时间尺度的分子光动力学模拟。
Chem Sci. 2019 Aug 5;10(35):8100-8107. doi: 10.1039/c9sc01742a. eCollection 2019 Sep 21.