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应用于生物分子的非经验非谐振动微扰理论:游离碱卟吩

Nonempirical anharmonic vibrational perturbation theory applied to biomolecules: free-base porphin.

作者信息

Krasnoshchekov Sergey V, Stepanov Nikolay F

机构信息

Lomonosov Moscow State University , Leninskiye Gory, 119991 Moscow, Russian Federation.

出版信息

J Phys Chem A. 2015 Mar 5;119(9):1616-27. doi: 10.1021/jp5077092. Epub 2014 Nov 18.

DOI:10.1021/jp5077092
PMID:25360995
Abstract

Anharmonic vibrational frequencies and intensities (infrared and Raman) of an isolated free-base porphin molecule are predicted from the quantum mechanical (QM) geometry, the "semi-diagonal" quartic force field, and dipole moment and polarizability surfaces. The second-order vibrational perturbation theory plus the numerical diagonalization of the Hamiltonian matrix containing off-diagonal Fermi and Darling-Dennison resonance couplings (VPT2+WK) was used. The QM calculations were carried out with the Becke-Lee-Yang-Parr composite exchange-correlation functional (B3LYP) and with the 6-31+G(d,p) basis set. The harmonic force field for the equilibrium configuration was transformed into nonredundant local symmetry internal coordinates, and normal coordinates were defined. The semi-diagonal quartic rectilinear normal coordinate potential energy surface (PES), as well as the cubic surfaces of dipole moment (p) and polarizability (α) components, needed for the VPT2+WK calculation, were constructed by a five-point finite differentiation of Hessians (for PES) and of the values and first derivatives of p and α. They were obtained at the point of equilibrium and for 432 displaced configurations. This theoretical approach provides very good agreement between the predicted and experimental frequencies and intensities. However, the favorable result can be partly attributed to error cancellation within the B3LYP/6-31+G(d,p) QM model, as observed in earlier studies. Reassignments of some observed bands are proposed.

摘要

通过量子力学(QM)几何结构、“半对角”四次力场以及偶极矩和极化率曲面,预测了孤立的游离碱卟吩分子的非谐振动频率和强度(红外和拉曼)。采用了二阶振动微扰理论加上包含非对角费米和达林 - 丹尼森共振耦合的哈密顿矩阵的数值对角化(VPT2 + WK)。QM计算使用了贝克 - 李 - 杨 - 帕尔复合交换相关泛函(B3LYP)和6 - 31 + G(d,p)基组。将平衡构型的谐力场转换为非冗余局部对称内坐标,并定义了正则坐标。VPT2 + WK计算所需的半对角四次直线正则坐标势能面(PES)以及偶极矩(p)和极化率(α)分量的三次曲面,通过对海森矩阵(用于PES)以及p和α的值及一阶导数进行五点有限差分来构建。它们是在平衡点以及432个位移构型处获得的。这种理论方法在预测频率和强度与实验值之间提供了非常好的一致性。然而,正如早期研究中所观察到的,良好的结果部分可归因于B3LYP / 6 - 31 + G(d,p) QM模型内的误差抵消。文中还提出了对一些观察到的谱带的重新归属。

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