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通向柔性分子中已观测到的和难以捉摸的构象异构体的精确结构与光谱特征的CC/DFT途径:以丙酮酸为例的研究。

CC/DFT Route toward Accurate Structures and Spectroscopic Features for Observed and Elusive Conformers of Flexible Molecules: Pyruvic Acid as a Case Study.

作者信息

Barone Vincenzo, Biczysko Malgorzata, Bloino Julien, Cimino Paola, Penocchio Emanuele, Puzzarini Cristina

机构信息

Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126 Pisa, Pisa, Italy.

Consiglio Nazionale delle Ricerche, Istituto di Chimica dei Composti OrganoMetallici (ICCOM-CNR), UOS di Pisa, Area della Ricerca CNR, Via G. Moruzzi 1, I-56124 Pisa, Pisa, Italy.

出版信息

J Chem Theory Comput. 2015 Sep 8;11(9):4342-63. doi: 10.1021/acs.jctc.5b00580. Epub 2015 Aug 7.

Abstract

The structures and relative stabilities as well as the rotational and vibrational spectra of the three low-energy conformers of pyruvic acid (PA) have been characterized using a state-of-the-art quantum-mechanical approach designed for flexible molecules. By making use of the available experimental rotational constants for several isotopologues of the most stable PA conformer, Tc-PA, the semiexperimental equilibrium structure has been derived. The latter provides a reference for the pure theoretical determination of the equilibrium geometries for all conformers, thus confirming for these structures an accuracy of 0.001 Å and 0.1 deg for bond lengths and angles, respectively. Highly accurate relative energies of all conformers (Tc-, Tt-, and Ct-PA) and of the transition states connecting them are provided along with the thermodynamic properties at low and high temperatures, thus leading to conformational enthalpies accurate to 1 kJ mol(-1). Concerning microwave spectroscopy, rotational constants accurate to about 20 MHz are provided for the Tt- and Ct-PA conformers, together with the computed centrifugal-distortion constants and dipole moments required to simulate their rotational spectra. For Ct-PA, vibrational frequencies in the mid-infrared region accurate to 10 cm(-1) are reported along with theoretical estimates for the transitions in the near-infrared range, and the corresponding infrared spectrum including fundamental transitions, overtones, and combination bands has been simulated. In addition to the new data described above, theoretical results for the Tc- and Tt-PA conformers are compared with all available experimental data to further confirm the accuracy of the hybrid coupled-cluster/density functional theory (CC/DFT) protocol applied in the present study. Finally, we discuss in detail the accuracy of computational models fully based on double-hybrid DFT functionals (mainly at the B2PLYP/aug-cc-pVTZ level) that avoid the use of very expensive CC calculations.

摘要

使用一种专门为柔性分子设计的先进量子力学方法,对丙酮酸(PA)的三种低能构象异构体的结构、相对稳定性以及旋转和振动光谱进行了表征。通过利用最稳定的PA构象异构体Tc-PA的几种同位素变体的现有实验旋转常数,推导出了半实验平衡结构。后者为所有构象异构体平衡几何结构的纯理论测定提供了参考,从而证实了这些结构的键长和键角精度分别为0.001 Å和0.1°。提供了所有构象异构体(Tc-、Tt-和Ct-PA)以及连接它们的过渡态的高精度相对能量,以及低温和高温下的热力学性质,从而得到了精确到1 kJ mol⁻¹的构象焓。关于微波光谱,为Tt-和Ct-PA构象异构体提供了精确到约20 MHz的旋转常数,以及模拟其旋转光谱所需的计算离心畸变常数和偶极矩。对于Ct-PA,报告了中红外区域精确到10 cm⁻¹的振动频率,以及近红外范围内跃迁的理论估计值,并模拟了包括基频跃迁、泛音和组合带的相应红外光谱。除了上述新数据外,还将Tc-和Tt-PA构象异构体的理论结果与所有可用实验数据进行了比较,以进一步证实本研究中应用的混合耦合簇/密度泛函理论(CC/DFT)协议的准确性。最后,我们详细讨论了完全基于双杂化DFT泛函(主要在B2PLYP/aug-cc-pVTZ水平)的计算模型的准确性,该模型避免了使用非常昂贵的CC计算。

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