嗜酸铁氧化钩端螺旋菌模式菌株DSM 14647的基因组序列草图
Draft Genome Sequence of the Iron-Oxidizing Acidophile Leptospirillum ferriphilum Type Strain DSM 14647.
作者信息
Cárdenas Juan Pablo, Lazcano Marcelo, Ossandon Francisco J, Corbett Melissa, Holmes David S, Watkin Elizabeth
机构信息
Fundación Ciência & Vida, Santiago, Chile.
School of Biomedical Sciences, Curtin University, Perth, Australia.
出版信息
Genome Announc. 2014 Nov 6;2(6):e01153-14. doi: 10.1128/genomeA.01153-14.
Abstract
The genomic features of the Leptospirillum ferriphilum type strain DSM 14647 are described here. An analysis of the predicted genes enriches our knowledge of the molecular basis of iron oxidation, improves our understanding of its role in industrial bioleaching, and suggests how it is adapted to live at extremely low pH.
摘要
本文描述了嗜铁钩端螺旋菌模式菌株DSM 14647的基因组特征。对预测基因的分析丰富了我们对铁氧化分子基础的认识，增进了我们对其在工业生物浸出中作用的理解，并揭示了它如何适应在极低pH值环境下生存。
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本文引用的文献
1
Recent advances in the structural and molecular biology of type IV secretion systems.
Curr Opin Struct Biol. 2014 Aug;27:16-23. doi: 10.1016/j.sbi.2014.02.006. Epub 2014 Apr 5.
2
CRISPR-mediated adaptive immune systems in bacteria and archaea.
Annu Rev Biochem. 2013;82:237-66. doi: 10.1146/annurev-biochem-072911-172315. Epub 2013 Mar 11.
3
Genomic insights into microbial iron oxidation and iron uptake strategies in extremely acidic environments.
Environ Microbiol. 2012 Jul;14(7):1597-611. doi: 10.1111/j.1462-2920.2011.02626.x. Epub 2011 Nov 3.
4
Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing "Leptospirillum rubarum" (Group II) and "Leptospirillum ferrodiazotrophum" (Group III) bacteria in acid mine drainage biofilms.
Appl Environ Microbiol. 2009 Jul;75(13):4599-615. doi: 10.1128/AEM.02943-08. Epub 2009 May 8.
5
Comparative genomic analysis of carbon and nitrogen assimilation mechanisms in three indigenous bioleaching bacteria: predictions and validations.
BMC Genomics. 2008 Dec 3;9:581. doi: 10.1186/1471-2164-9-581.
6
The RAST Server: rapid annotations using subsystems technology.
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
7
Evaluation of Leptospirillum ferrooxidans for Leaching.
Appl Environ Microbiol. 1992 Jan;58(1):85-92. doi: 10.1128/aem.58.1.85-92.1992.
8
Molecular relationship between two groups of the genus Leptospirillum and the finding that Leptospirillum ferriphilum sp. nov. dominates South African commercial biooxidation tanks that operate at 40 degrees C.
Appl Environ Microbiol. 2002 Feb;68(2):838-45. doi: 10.1128/AEM.68.2.838-845.2002.
9
The COG database: new developments in phylogenetic classification of proteins from complete genomes.
Nucleic Acids Res. 2001 Jan 1;29(1):22-8. doi: 10.1093/nar/29.1.22.
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