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硫氧化嗜酸菌模式菌株（DSM 14366）的基因组序列草图

Draft genome sequence of the type strain of the sulfur-oxidizing acidophile, (DSM 14366).

作者信息

Castro Matías, Moya-Beltrán Ana, Covarrubias Paulo C, Gonzalez Mónica, Cardenas Juan Pablo, Issotta Francisco, Nuñez Harold, Acuña Lillian G, Encina Gonzalo, Holmes David S, Johnson D Barrie, Quatrini Raquel

机构信息

Fundación Ciencia & Vida, Av. Zañartu 1482, Santiago, 7780272 Chile.

Current Address: uBiome Chile, SpA, Santiago, Chile.

出版信息

Stand Genomic Sci. 2017 Dec 15;12:77. doi: 10.1186/s40793-017-0282-y. eCollection 2017.

DOI:10.1186/s40793-017-0282-y
PMID:29255572
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5731081/
Abstract

is an extremely acidophilic, mesophilic, obligatory autotrophic sulfur-oxidizer, with potential importance in the bioleaching of sulfidic metal ores, first described in the 1980s. Here we present the draft genome sequence of DSM 14366, thereby both filling a long-standing gap in the genomics of the acidithiobacilli, and providing further insight into the understanding of the biology of the non iron-oxidizing members of the genus. The assembled genome is 3,1 Mb, and contains 47 tRNAs, tmRNA gene and 2 rRNA operons, along with 3149 protein-coding predicted genes. The Whole Genome Shotgun project was deposited in DDBJ/EMBL/GenBank under the accession MOAD00000000.

摘要

是一种极端嗜酸、嗜温、 obligatory自养硫氧化菌，在硫化金属矿石的生物浸出中具有潜在重要性，于20世纪80年代首次被描述。在此，我们展示了DSM 14366的基因组草图序列，既填补了嗜酸硫杆菌基因组学中长期存在的空白，又为深入了解该属非铁氧化成员的生物学特性提供了进一步的见解。组装后的基因组为3.1 Mb，包含47个tRNA、tmRNA基因和2个rRNA操纵子，以及3149个预测的蛋白质编码基因。全基因组枪击项目已存入DDBJ/EMBL/GenBank，登录号为MOAD00000000。 （注：“obligatory”这里推测可能是“专性的”之类意思，但原文可能有误，正常可能是“obligate” ）

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f52/5731081/a3f4ee775a01/40793_2017_282_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f52/5731081/8c538d09109e/40793_2017_282_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f52/5731081/e162354fc6f4/40793_2017_282_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f52/5731081/a3f4ee775a01/40793_2017_282_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f52/5731081/8c538d09109e/40793_2017_282_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f52/5731081/e162354fc6f4/40793_2017_282_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f52/5731081/a3f4ee775a01/40793_2017_282_Fig3_HTML.jpg

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