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脱水对挪威枫正统种子全基因组DNA甲基化动态变化的影响

Effect of desiccation on the dynamics of genome-wide DNA methylation in orthodox seeds of Acer platanoides L.

作者信息

Plitta Beata P, Michalak Marcin, Bujarska-Borkowska Barbara, Barciszewska Mirosława Z, Barciszewski Jan, Chmielarz Paweł

出版信息

Plant Physiol Biochem. 2014 Dec;85:71-7. doi: 10.1016/j.plaphy.2014.10.014.

Abstract

5-methylcytosine, an abundant epigenetic mark, plays an important role in the regulation of plant growth and development, but there is little information about stress-induced changes in DNA methylation in seeds. In the present study, changes in a global level of m5C were measured in orthodox seeds of Acer platanoides L. during seed desiccation from a WC of 1.04 to 0.05-0.06 g H2O g g(-1) dry mass (g g(-1)). Changes in the level of DNA methylation were measured using 2D TLC e based method. Quality of desiccated seeds was examined by germination and seedling emergence tests. Global m5C content (R2)increase was observed in embryonic axes isolated from seeds collected at a high WC of 1.04 g g(-1) after their desiccation to significantly lower WC of 0.17 and 0.19 g g(-1). Further desiccation of these seeds to a WC of 0.06 g g(-1), however, resulted in a significant DNA demethylation to R2 ¼ 11.52-12.22%. Similar m5C decrease was observed in seeds which undergo maturation drying on the tree and had four times lower initial WC of 0.27 g g(-1) at the time of harvest, as they were dried to a WC of 0.05 g g(-1). These data confirm that desiccation induces changes in seed m5C levels. Results were validated by seed lots derived from tree different A. platanoides provenances. It is plausible that sine wave-like alterations in m5C amount may represent a specific response of orthodox seeds to drying and play a relevant role in desiccation tolerance in seeds.

摘要

5-甲基胞嘧啶是一种丰富的表观遗传标记,在植物生长发育调控中发挥着重要作用,但关于种子中胁迫诱导的DNA甲基化变化的信息却很少。在本研究中,对悬铃木(Acer platanoides L.)的正常种子在从1.04 g H₂O g⁻¹干重(g g⁻¹)的含水量干燥至0.05 - 0.06 g H₂O g⁻¹干重(g g⁻¹)的过程中,全基因组水平的5-甲基胞嘧啶(m⁵C)变化进行了测定。使用基于二维薄层层析(2D TLC)的方法测量DNA甲基化水平的变化。通过发芽和幼苗出土试验检测干燥种子的质量。从含水量为1.04 g g⁻¹时采集的种子中分离出的胚轴,在干燥至显著更低的含水量0.17和0.19 g g⁻¹后,观察到全基因组m⁵C含量(R₂)增加。然而,将这些种子进一步干燥至含水量0.06 g g⁻¹,导致DNA显著去甲基化,R₂降至11.52 - 12.22%。在树上经历成熟干燥且收获时初始含水量为0.27 g g⁻¹(低四倍)的种子,在干燥至含水量0.05 g g⁻¹时也观察到类似的m⁵C减少。这些数据证实干燥诱导了种子m⁵C水平的变化。结果通过来自不同悬铃木种源树木的种子批次得到验证。m⁵C含量呈正弦波状变化可能代表正常种子对干燥的特定反应,并在种子的干燥耐受性中发挥相关作用,这是合理的。

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