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迟钝柄杆菌的基因组序列与表型特征分析

Genome sequence and phenotypic characterization of Caulobacter segnis.

作者信息

Patel Sagar, Fletcher Brock, Scott Derrick C, Ely Bert

机构信息

Department of Biological Sciences, University of South Carolina, Columbia, SC, 29208, USA.

出版信息

Curr Microbiol. 2015 Mar;70(3):355-63. doi: 10.1007/s00284-014-0726-1. Epub 2014 Nov 15.

Abstract

Caulobacter segnis is a unique species of Caulobacter that was initially deemed Mycoplana segnis because it was isolated from soil and appeared to share a number of features with other Mycoplana. After a 16S rDNA analysis showed that it was closely related to Caulobacter crescentus, it was reclassified C. segnis. Because the C. segnis genome sequence available in GenBank contained 126 pseudogenes, we compared the original sequencing data to the GenBank sequence and determined that many of the pseudogenes were due to sequence errors in the GenBank sequence. Consequently, we used multiple approaches to correct and reannotate the C. segnis genome sequence. In total, we deleted 247 bp, added 14 bp, and changed 8 bp resulting in 233 fewer bases in our corrected sequence. The corrected sequence contains only 15 pseudogenes compared to 126 in the original annotation. Furthermore, we found that unlike Mycoplana, C. segnis divides by fission, producing swarmer cells that have a single, polar flagellum.

摘要

迟钝柄杆菌是柄杆菌属中的一个独特物种,最初被认为是迟缓枝原体,因为它是从土壤中分离出来的,并且似乎与其他枝原体有许多共同特征。16S rDNA分析表明它与新月柄杆菌密切相关后,它被重新分类为迟钝柄杆菌。由于GenBank中可用的迟钝柄杆菌基因组序列包含126个假基因,我们将原始测序数据与GenBank序列进行了比较,并确定许多假基因是由于GenBank序列中的序列错误造成的。因此,我们使用多种方法对迟钝柄杆菌基因组序列进行了校正和重新注释。我们总共删除了247 bp,添加了14 bp,并改变了8 bp,从而使我们校正后的序列减少了233个碱基。与原始注释中的126个相比,校正后的序列仅包含15个假基因。此外,我们发现与枝原体不同,迟钝柄杆菌通过分裂进行繁殖,产生具有单个极鞭毛的游动细胞。

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