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植物促生菌鞘氨醇单胞菌 CBR1 的全基因组序列

Complete Genome Sequence of the Plant-Growth-Promoting Bacterium Caulobacter segnis CBR1.

机构信息

Department of Biological Sciences, University of South Carolina, Columbia, SC, 29208, USA.

出版信息

Curr Microbiol. 2021 Aug;78(8):2935-2942. doi: 10.1007/s00284-021-02548-z. Epub 2021 May 28.

DOI:10.1007/s00284-021-02548-z
PMID:34047832
Abstract

Genomic sequencing has vastly expedited our understanding of bacterial functions. However, the genomes of many plant-growth-promoting bacteria (PGPB) have yet to be sequenced and contextualized. To this end, I report the sequenced genome of a PGPB-Caulobacter segnis CBR1-and contextualize its genomic features with the genomic features of sequenced Caulobacter strains. Moreover, I demonstrate that the CBR1 genome harbors genomic features that have been shown to be necessary for select Caulobacter strains to enhance the growth and development of Arabidopsis plants. Together, these findings will help guide future investigations that seek to understand the molecular factors undergirding the positive interactions between plants and microbes.

摘要

基因组测序极大地加速了我们对细菌功能的理解。然而,许多植物促生菌(PGPB)的基因组尚未被测序和背景化。为此,我报告了一个 PGPB-Caulobacter segnis CBR1 的测序基因组,并将其基因组特征与已测序的 Caulobacter 菌株的基因组特征进行了对比。此外,我证明了 CBR1 基因组具有一些基因组特征,这些特征对于某些 Caulobacter 菌株增强拟南芥植物的生长和发育是必要的。这些发现将有助于指导未来的研究,以了解植物和微生物之间正向相互作用的分子基础。

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本文引用的文献

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The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities.PATRIC 生物信息学资源中心:扩展数据和分析功能。
Nucleic Acids Res. 2020 Jan 8;48(D1):D606-D612. doi: 10.1093/nar/gkz943.
2
The rapid generation of mutation data matrices from protein sequences.从蛋白质序列中快速生成突变数据矩阵。
Comput Appl Biosci. 1992 Jun;8(3):275-82. doi: 10.1093/bioinformatics/8.3.275.
日本壤土农田中甜菜侧根细菌群落结构的季节性变化
Microbes Environ. 2023;38(1). doi: 10.1264/jsme2.ME22071.
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Interactions between Soil Bacterial Diversity and Plant-Parasitic Nematodes in Soybean Plants.土壤细菌多样性与大豆植物寄生线虫的相互作用。
Appl Environ Microbiol. 2022 Sep 13;88(17):e0096322. doi: 10.1128/aem.00963-22. Epub 2022 Aug 24.