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补偿性突变发生在蛋白质结构中有害突变的静电相互作用范围内。

Compensatory mutations occur within the electrostatic interaction range of deleterious mutations in protein structure.

作者信息

Bhattacherjee Amrita, Mallik Saurav, Kundu Sudip

机构信息

Department of Biophysics, Molecular Biology and Bioinformatics, University of Calcutta, 92, Acharya Prafulla Chandra Road, Kolkata, 700009, India.

出版信息

J Mol Evol. 2015 Jan;80(1):10-2. doi: 10.1007/s00239-014-9654-8. Epub 2014 Nov 16.

DOI:10.1007/s00239-014-9654-8
PMID:25399321
Abstract

A compensatory mutation (CM) counter balances lethal effects of a deleterious mutation (DM), ensuring the persistence of both through natural selection. However, little is known about the biological aspects of CMs those restore the structural alterations of proteins caused by slightly DMs. Here, by analyzing the evolution of the UDP-glycosyltransferase 73B4 protein among monocot-dicot plants, we investigate the occurrence of CMs around slightly DMs in 3D space. Our results illustrate that CMs exhibit significantly higher tendency to occur within the range of electrostatic interaction around the slightly DMs, compared to occurring randomly in the protein.

摘要

补偿性突变(CM)可抵消有害突变(DM)的致死效应,通过自然选择确保两者都能留存下来。然而,对于那些能恢复由轻度有害突变引起的蛋白质结构改变的补偿性突变的生物学特性,我们却知之甚少。在此,通过分析单子叶植物和双子叶植物中UDP-糖基转移酶73B4蛋白的进化情况,我们研究了三维空间中轻度有害突变周围补偿性突变的发生情况。我们的结果表明,与在蛋白质中随机发生相比,补偿性突变在轻度有害突变周围的静电相互作用范围内发生的倾向要高得多。

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本文引用的文献

1
Sequence and 3D structure based analysis of TNT degrading proteins in Arabidopsis thaliana.基于序列和三维结构的拟南芥中TNT降解蛋白分析
J Mol Model. 2014 Mar;20(3):2174. doi: 10.1007/s00894-014-2174-z. Epub 2014 Mar 4.
2
Mitochondrial-nuclear interactions and accelerated compensatory evolution: evidence from the primate cytochrome C oxidase complex.线粒体-核相互作用和加速的补偿性进化:来自灵长类细胞色素 C 氧化酶复合物的证据。
Mol Biol Evol. 2012 Jan;29(1):337-46. doi: 10.1093/molbev/msr211. Epub 2011 Sep 1.
3
Improved side-chain torsion potentials for the Amber ff99SB protein force field.
牻牛儿苗科质体核糖体基因中的质体-核相互作用与加速协同进化
Genome Biol Evol. 2016 Jun 27;8(6):1824-38. doi: 10.1093/gbe/evw115.
改进的 Amber ff99SB 蛋白质力场的侧链扭转势。
Proteins. 2010 Jun;78(8):1950-8. doi: 10.1002/prot.22711.
4
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Proc Biol Sci. 2009 May 22;276(1663):1823-7. doi: 10.1098/rspb.2008.1846. Epub 2009 Feb 25.
5
Protein structure modeling with MODELLER.使用MODELLER进行蛋白质结构建模。
Methods Mol Biol. 2008;426:145-59. doi: 10.1007/978-1-60327-058-8_8.
6
PAML 4: phylogenetic analysis by maximum likelihood.PAML 4:基于最大似然法的系统发育分析。
Mol Biol Evol. 2007 Aug;24(8):1586-91. doi: 10.1093/molbev/msm088. Epub 2007 May 4.
7
BLAST: at the core of a powerful and diverse set of sequence analysis tools.BLAST:一系列强大且多样的序列分析工具的核心。
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W20-5. doi: 10.1093/nar/gkh435.
8
Adaptation to the deleterious effects of antimicrobial drug resistance mutations by compensatory evolution.通过补偿性进化来适应抗菌药物耐药性突变的有害影响。
Res Microbiol. 2004 Jun;155(5):360-9. doi: 10.1016/j.resmic.2004.01.019.
9
MUSCLE: multiple sequence alignment with high accuracy and high throughput.MUSCLE:具有高精度和高吞吐量的多序列比对。
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7. doi: 10.1093/nar/gkh340. Print 2004.
10
ModLoop: automated modeling of loops in protein structures.ModLoop:蛋白质结构中环的自动建模
Bioinformatics. 2003 Dec 12;19(18):2500-1. doi: 10.1093/bioinformatics/btg362.