Gamm Magdalena, Peviani Alessia, Honsel Anne, Snel Berend, Smeekens Sjef, Hanson Johannes
BMC Plant Biol. 2014 Nov 18;14:306. doi: 10.1186/s12870-014-0306-3.
Protein synthesis is a highly energy demanding process and is regulated according to cellular energy levels. Light and sugar availability affect mRNA translation in plant cells but the specific roles of these factors remain unclear. In this study, sucrose was applied to Arabidopsis seedlings kept in the light or in the dark, in order to distinguish sucrose and light effects on transcription and translation. These were studied using microarray analysis of steady-state mRNA and mRNA bound to translating ribosomes.
Steady-state mRNA levels were affected differently by sucrose in the light and in the dark but general translation increased to a similar extent in both conditions. For a majority of the transcripts changes of the transcript levels were followed by changes in polysomal mRNA levels. However, for 243 mRNAs, a change in polysomal occupancy (defined as polysomal levels related to steady-state levels of the mRNA) was observed after sucrose treatment in the light, but not in the dark condition. Many of these mRNAs are annotated as encoding ribosomal proteins, supporting specific translational regulation of this group of transcripts. Unexpectedly, the numbers of ribosomes bound to each mRNA decreased for mRNAs with increased polysomal occupancy.
Our results suggest that sucrose regulate translation of these 243 mRNAs specifically in the light, through a novel regulatory mechanism. Our data shows that increased polysomal occupancy is not necessarily leading to more ribosomes per transcript, suggesting a mechanism of translational induction not solely dependent on increased translation initiation rates.
蛋白质合成是一个对能量需求很高的过程,并根据细胞能量水平进行调节。光照和糖分供应会影响植物细胞中的mRNA翻译,但这些因素的具体作用仍不清楚。在本研究中,将蔗糖施加于置于光照或黑暗条件下的拟南芥幼苗,以区分蔗糖和光照对转录和翻译的影响。使用对稳态mRNA和与正在翻译的核糖体结合的mRNA进行微阵列分析来研究这些影响。
稳态mRNA水平在光照和黑暗条件下受蔗糖的影响不同,但总体翻译在两种条件下均有相似程度的增加。对于大多数转录本,转录水平的变化之后是多聚核糖体mRNA水平的变化。然而,对于243个mRNA,在光照条件下蔗糖处理后观察到多聚核糖体占有率(定义为与mRNA稳态水平相关的多聚核糖体水平)发生变化,而在黑暗条件下未观察到。这些mRNA中有许多被注释为编码核糖体蛋白,支持对这一组转录本的特异性翻译调控。出乎意料的是,对于多聚核糖体占有率增加的mRNA,与每个mRNA结合的核糖体数量减少。
我们的结果表明,蔗糖通过一种新的调控机制,在光照条件下特异性地调节这243个mRNA的翻译。我们的数据表明,多聚核糖体占有率的增加不一定导致每个转录本有更多的核糖体,这表明存在一种翻译诱导机制,其不仅仅依赖于翻译起始速率的增加。