Pettitt Stephen J, Tan E-Pien, Yusa Kosuke
Breakthrough Breast Cancer Research Centre, Institute of Cancer Research, London, UK.
Methods Mol Biol. 2015;1239:15-28. doi: 10.1007/978-1-4939-1862-1_2.
Forward genetic screening is a powerful non-hypothesis-driven approach to unveil the molecular mechanisms and pathways underlying phenotypes of interest. In this approach, a genome-wide mutant library is first generated and then screened for a phenotype of interest. Subsequently, genes responsible for the phenotype are identified. There have been a number of successful screens in yeasts, Caenorhabditis elegans and Drosophila. These model organisms all allow loss-of-function mutants to be generated easily on a genome-wide scale: yeasts have a haploid stage in their reproductive cycles and the latter two organisms have short generation times, allowing mutations to be systematically bred to homozygosity. However, in mammals, the diploid genome and long generation time have always hampered rapid and efficient production of homozygous mutant cells and animals. The recent discovery of several haploid mammalian cell lines promises to revolutionize recessive genetic screens in mammalian cells. In this protocol, we describe an overview of insertional mutagenesis, focusing on DNA transposons, and provide a method for an efficient generation of genome-wide mutant libraries using mouse haploid embryonic stem cells.
正向遗传学筛选是一种强大的非假设驱动方法,用于揭示感兴趣表型背后的分子机制和信号通路。在这种方法中,首先构建全基因组突变文库,然后筛选感兴趣的表型。随后,鉴定出导致该表型的基因。在酵母、秀丽隐杆线虫和果蝇中已经进行了许多成功的筛选。这些模式生物都允许在全基因组范围内轻松产生功能丧失突变体:酵母在其生殖周期中有一个单倍体阶段,而后两种生物的世代时间较短,使得突变能够系统地纯合。然而,在哺乳动物中,二倍体基因组和较长的世代时间一直阻碍着纯合突变细胞和动物的快速高效产生。最近发现的几种单倍体哺乳动物细胞系有望彻底改变哺乳动物细胞中的隐性遗传筛选。在本方案中,我们概述了插入诱变,重点介绍DNA转座子,并提供了一种使用小鼠单倍体胚胎干细胞高效构建全基因组突变文库的方法。