Sharma Deepak, Priyadarshini Pragya, Vrati Sudhanshu
Vaccine and Infectious Disease Research Centre, Translational Health Science and Technology Institute, Gurgaon, India
Vaccine and Infectious Disease Research Centre, Translational Health Science and Technology Institute, Gurgaon, India.
J Virol. 2015 Feb;89(3):1489-501. doi: 10.1128/JVI.02027-14. Epub 2014 Nov 26.
The beginning of the second century of research in the field of virology (the first virus was discovered in 1898) was marked by its amalgamation with bioinformatics, resulting in the birth of a new domain--viroinformatics. The availability of more than 100 Web servers and databases embracing all or specific viruses (for example, dengue virus, influenza virus, hepatitis virus, human immunodeficiency virus [HIV], hemorrhagic fever virus [HFV], human papillomavirus [HPV], West Nile virus, etc.) as well as distinct applications (comparative/diversity analysis, viral recombination, small interfering RNA [siRNA]/short hairpin RNA [shRNA]/microRNA [miRNA] studies, RNA folding, protein-protein interaction, structural analysis, and phylotyping and genotyping) will definitely aid the development of effective drugs and vaccines. However, information about their access and utility is not available at any single source or on any single platform. Therefore, a compendium of various computational tools and resources dedicated specifically to virology is presented in this article.
病毒学领域研究进入第二个世纪(1898年发现了第一种病毒),其标志是与生物信息学融合,从而诞生了一个新领域——病毒信息学。有100多个涵盖所有或特定病毒(如登革热病毒、流感病毒、肝炎病毒、人类免疫缺陷病毒[HIV]、出血热病毒[HFV]、人乳头瘤病毒[HPV]、西尼罗河病毒等)的网络服务器和数据库,以及不同的应用程序(比较/多样性分析、病毒重组、小干扰RNA[siRNA]/短发夹RNA[shRNA]/微小RNA[miRNA]研究、RNA折叠、蛋白质-蛋白质相互作用、结构分析以及系统分型和基因分型),这无疑将有助于开发有效的药物和疫苗。然而,关于这些资源的访问方式和用途,在任何单一来源或平台上都无法获取。因此,本文介绍了专门针对病毒学的各种计算工具和资源的汇编。