Chen Jinhuan, Yin Weilun, Xia Xinli
National Engineering Laboratory for Tree Breeding, Beijing Forestry University Beijing 100083, China ; College of Biological Sciences and technology, Beijing Forestry University Beijing 100083, China.
Curr Genomics. 2014 Oct;15(5):326-40. doi: 10.2174/138920291505141106101835.
Heat stress, which strongly affects plant performance and often results in reduced vegetative growth and yields depression, has become an increasingly serious global problem. Populus euphratica Oliv. which has been considered as a tree model for the study of plant response to abiotic stresses, could be resistant to an extremely wide environmental temperature range (-40 °C to 45 °C). Previous study is mainly focused on its gene regulation upon drought and salt stress. However, little is known about gene regulation at the global transcriptome level upon heat stress. To understand the gene network controlling heat stress in P. euphratica, a transcriptome sequencing using Illumina Hiseq 2000 was performed to generate a 10 gigabases depth for each sample in the tissue of leaf. 119,573 unigeneswere generated with an average length of 474 bp. Approximately 49,605 (41.49%) unigenes exhibited significantly different expressions between two libraries. Among these unigenes, 11,165 (9.34%) were upregulated and 38,440 (32.15%) were down regulated. Heat shock proteins classified as molecular chaperones showed a significant percentage (1.13%) in the up regulated group. Heat responsive genes, such as polyubiquitins, were over expressed in heat treated sample. GO enrichment analysis revealed that the Go terms for differentially expressed unigenes were significantly enriched in hormone-mediated signal, biological process regulation and metabolic process regulation. Our data revealed a global transcriptome picture of P. euphratica in response to heat shock. The identified potential heat stress-related transcripts can be used to infer the gene regulation networks underlying the molecular mechanisms of heat response in P. euphratica.
热胁迫严重影响植物生长,常导致营养生长受抑和产量降低,已成为一个日益严峻的全球性问题。胡杨被视为研究植物对非生物胁迫响应的树木模型,能耐受极广的环境温度范围(-40°C至45°C)。以往研究主要聚焦于其对干旱和盐胁迫的基因调控。然而,对于热胁迫下全球转录组水平的基因调控却知之甚少。为了解胡杨中控制热胁迫的基因网络,利用Illumina Hiseq 2000进行转录组测序,以在叶片组织的每个样本中生成10千兆碱基的深度。共生成了119,573个单基因,平均长度为474 bp。在两个文库之间,约49,605个(41.49%)单基因表现出显著不同的表达。在这些单基因中,11,165个(9.34%)上调,38,440个(32.15%)下调。被归类为分子伴侣的热休克蛋白在上调组中占显著比例(1.13%)。热响应基因,如多聚泛素,在热处理样本中过度表达。基因本体(GO)富集分析表明,差异表达单基因的GO术语在激素介导的信号、生物过程调控和代谢过程调控中显著富集。我们的数据揭示了胡杨对热休克响应的全球转录组图谱。所鉴定出的潜在热胁迫相关转录本可用于推断胡杨热响应分子机制背后的基因调控网络。