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利用一种基于新型M13的转导测定法对大肠杆菌中转座子Tn7的附着位点attTn7进行遗传分析。

Genetic analysis of attTn7, the transposon Tn7 attachment site in Escherichia coli, using a novel M13-based transduction assay.

作者信息

Qadri M I, Flores C C, Davis A J, Lichtenstein C P

机构信息

Centre for Biotechnology, Imperial College of Science, Technology and Medicine, London, England.

出版信息

J Mol Biol. 1989 May 5;207(1):85-98. doi: 10.1016/0022-2836(89)90442-7.

DOI:10.1016/0022-2836(89)90442-7
PMID:2544739
Abstract

The large (14 kb; kb = 10(3) bases) bacterial transposon, Tn7 (encoding resistance to trimethoprim and streptomycin/spectinomycin), has unusual properties. Like other elements, Tn7 transposes with low efficiency and low target-site specificity, but Tn7 also transposes, with high frequency in a unique orientation, to a preferred "attachment" site, called attTn7, in the Escherichia coli chromosome and similarly into plasmids containing attTn7. We developed a novel bacteriophage M13-based assay system to measure the transposition frequency of Tn7 to M13mp phage vectors containing attTn7 on a cloned 1 kb fragment of chromosomal DNA. Phage harvested from a Tn7 donor strain were used to infect recipient bacteria with selection for trimethoprim resistance. Transposition frequency, expressed as the number of trimethoprim-resistant colonies per plaque-forming unit, was found to be approximately 10(-4) to M13mp::attTn7, in contrast to 10(-10) to M13mp recombinants with approximately 1 kb insertions of other, "generic brand", DNA. By deletion analysis of M13mp::attTn7, we show that attTn7 is contained within a 64 base-pair region; sequences adjacent to the actual insertion site and encoding the carboxy terminus of the glmS gene are required. This assay also provided evidence for transposition immunity conferred by the right end of Tn7.

摘要

大的(14 kb;kb = 10³个碱基)细菌转座子Tn7(编码对甲氧苄啶和链霉素/壮观霉素的抗性)具有不同寻常的特性。与其他元件一样,Tn7转座效率低且靶位点特异性低,但Tn7还会以独特的方向高频转座到大肠杆菌染色体中一个称为attTn7的首选“附着”位点,同样也会转座到含有attTn7的质粒中。我们开发了一种基于新型噬菌体M13的检测系统,以测量Tn7转座到在克隆的1 kb染色体DNA片段上含有attTn7的M13mp噬菌体载体的频率。从Tn7供体菌株收获的噬菌体用于感染受体细菌,并选择对甲氧苄啶具有抗性的细菌。转座频率表示为每噬菌斑形成单位中对甲氧苄啶抗性菌落的数量,发现转座到M13mp::attTn7的频率约为10⁻⁴,相比之下,转座到插入了约1 kb其他“通用型”DNA的M13mp重组体的频率为10⁻¹⁰。通过对M13mp::attTn7的缺失分析,我们表明attTn位于一个64个碱基对的区域内;与实际插入位点相邻且编码glmS基因羧基末端的序列是必需的。该检测还为Tn7右端赋予的转座免疫提供了证据。

相似文献

1
Genetic analysis of attTn7, the transposon Tn7 attachment site in Escherichia coli, using a novel M13-based transduction assay.利用一种基于新型M13的转导测定法对大肠杆菌中转座子Tn7的附着位点attTn7进行遗传分析。
J Mol Biol. 1989 May 5;207(1):85-98. doi: 10.1016/0022-2836(89)90442-7.
2
Sequence requirements of Escherichia coli attTn7, a specific site of transposon Tn7 insertion.大肠杆菌attTn7的序列要求,转座子Tn7插入的一个特定位点。
J Bacteriol. 1988 Jan;170(1):352-8. doi: 10.1128/jb.170.1.352-358.1988.
3
Recognition of Escherichia coli attTn7 by transposon Tn7: lack of specific sequence requirements at the point of Tn7 insertion.转座子Tn7对大肠杆菌attTn7的识别:Tn7插入位点缺乏特定序列要求。
J Bacteriol. 1988 Jun;170(6):2832-40. doi: 10.1128/jb.170.6.2832-2840.1988.
4
Transposon Tn7. cis-Acting sequences in transposition and transposition immunity.转座子Tn7。转座和顺式作用序列以及转座免疫。
J Mol Biol. 1989 May 5;207(1):35-52. doi: 10.1016/0022-2836(89)90439-7.
5
Site-specific properties of Tn7 transposition into the E. coli chromosome.Tn7转座至大肠杆菌染色体的位点特异性特性。
Mol Gen Genet. 1981;183(2):380-7. doi: 10.1007/BF00270644.
6
mini-Tn7 insertion in bacteria with secondary, non-glmS-linked attTn7 sites: example Proteus mirabilis HI4320.在具有二级、非 glmS 连接的 attTn7 位点的细菌中进行 mini-Tn7 插入:奇异变形杆菌 HI4320 的示例
Nat Protoc. 2006;1(1):170-8. doi: 10.1038/nprot.2006.26.
7
mini-Tn7 insertion in bacteria with multiple glmS-linked attTn7 sites: example Burkholderia mallei ATCC 23344.在具有多个与 glmS 相连的 attTn7 位点的细菌中进行 mini-Tn7 插入:以鼻疽伯克霍尔德菌 ATCC 23344 为例
Nat Protoc. 2006;1(1):162-9. doi: 10.1038/nprot.2006.25.
8
Tn7 transposition in vitro proceeds through an excised transposon intermediate generated by staggered breaks in DNA.Tn7体外转座通过DNA中交错断裂产生的切除转座子中间体进行。
Cell. 1991 May 31;65(5):805-16. doi: 10.1016/0092-8674(91)90388-f.
9
Tn7: a target site-specific transposon.Tn7:一种位点特异性转座子。
Mol Microbiol. 1991 Nov;5(11):2569-73. doi: 10.1111/j.1365-2958.1991.tb01964.x.
10
Transposon Tn7 protein TnsD binding to Escherichia coli attTn7 DNA and its eukaryotic orthologs.转座子Tn7蛋白TnsD与大肠杆菌attTn7 DNA及其真核直系同源物的结合
Biochemistry. 2004 Mar 16;43(10):2941-6. doi: 10.1021/bi035535u.

引用本文的文献

1
Transposon Tn7 directs transposition into the genome of filamentous bacteriophage M13 using the element-encoded TnsE protein.转座子Tn7利用元件编码的TnsE蛋白将转座导向丝状噬菌体M13的基因组。
J Bacteriol. 2007 Dec;189(24):9122-5. doi: 10.1128/JB.01451-07. Epub 2007 Oct 5.
2
Bacterial transposon Tn7 utilizes two different classes of target sites.细菌转座子Tn7利用两类不同的靶位点。
J Bacteriol. 1990 May;172(5):2774-8. doi: 10.1128/jb.172.5.2774-2778.1990.
3
DNA sequence analysis of five genes; tnsA, B, C, D and E, required for Tn7 transposition.
Tn7转座所需的五个基因tnsA、B、C、D和E的DNA序列分析。
Nucleic Acids Res. 1990 Feb 25;18(4):901-11. doi: 10.1093/nar/18.4.901.