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从 Aureispira sp. CCB-QB1 的基因组草图中鉴定多不饱和脂肪酸和二萜生物合成途径。

Identification of polyunsaturated fatty acid and diterpenoid biosynthesis pathways from draft genome of Aureispira sp. CCB-QB1.

作者信息

Furusawa Go, Lau Nyok-Sean, Shu-Chien Alexander Chong, Jaya-Ram Annette, Amirul Al-Ashraf Abdullah

机构信息

Centre for Chemical Biology, Universiti Sains Malaysia, 10 Persiaran Bukit Jambul, 11900 Bayan Lepas, Penang, Malaysia.

Centre for Chemical Biology, Universiti Sains Malaysia, 10 Persiaran Bukit Jambul, 11900 Bayan Lepas, Penang, Malaysia.

出版信息

Mar Genomics. 2015 Feb;19:39-44. doi: 10.1016/j.margen.2014.10.006. Epub 2014 Nov 11.

Abstract

The genus Aureispira consisting of two species, Aureispira marina and Aureispira maritima is an arachidonic acid-producing bacterium and produces secondary metabolites. In this study, we isolated a new Aureispira strain, Aureispira sp. CCB-QB1 from coastal area of Penang, Malaysia and the genome sequence of this strain was determined. The draft genome of this strain is composed of 185 contigs for 7,370,077 bases with 35.6% G+C content and contains 5911 protein-coding genes and 76 RNA genes. Linoleoyl-CoA desaturase, the key gene in arachidonic acid biosynthesis, is present in the genome. It was found that this strain uses mevalonate pathway for the synthesis of geranylgeranyl diphosphate (GGPP), which is precursor of diterpenoid, and novel pathway via futalosine for the synthesis of menaquinones. This is the first draft genome sequence of a member of the genus Aureispira.

摘要

金黄螺旋菌属由两个物种组成,即海洋金黄螺旋菌(Aureispira marina)和海生金黄螺旋菌(Aureispira maritima),是一种能产生花生四烯酸并产生次生代谢产物的细菌。在本研究中,我们从马来西亚槟城沿海地区分离出一种新的金黄螺旋菌菌株,即金黄螺旋菌CCB-QB1,并测定了该菌株的基因组序列。该菌株的基因组草图由185个重叠群组成,共7370077个碱基,G+C含量为35.6%,包含5911个蛋白质编码基因和76个RNA基因。花生四烯酸生物合成中的关键基因——亚油酰辅酶A去饱和酶存在于基因组中。研究发现,该菌株利用甲羟戊酸途径合成二萜类化合物的前体香叶基香叶基二磷酸(GGPP),并通过一种经由福他洛辛的新途径合成甲基萘醌。这是金黄螺旋菌属成员的首个基因组草图序列。

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