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哺乳动物酒精脱氢酶基因组显示出多个基因复制和基因丢失事件,从而产生了一大组不同的酶,包括假酶。

The mammalian alcohol dehydrogenase genome shows several gene duplications and gene losses resulting in a large set of different enzymes including pseudoenzymes.

作者信息

Östberg Linus J, Persson Bengt, Höög Jan-Olov

机构信息

Department of Medical Biochemistry and Biophysics, Science for Life Laboratory, Karolinska Institutet, SE-171 77 Stockholm, Sweden.

Department of Cell and Molecular Biology, Science for Life Laboratory, Karolinska Institutet, SE-171 77 Stockholm, Sweden; Department of Cell and Molecular Biology, Science for Life Laboratory, Uppsala University, SE-751 24 Uppsala, Sweden.

出版信息

Chem Biol Interact. 2015 Jun 5;234:80-4. doi: 10.1016/j.cbi.2014.11.020. Epub 2014 Dec 3.

Abstract

Mammalian alcohol dehydrogenase (ADH) is a protein family divided into six classes and the number of known family members is increasing rapidly. Several primate genomes are completely analyzed for the ADH region, where higher primates (human and hominoids) have seven genes of classes ADH1-ADH5. Within the group of non-hominoids apes there have been further duplications and species with more than the typical three isozymic forms for ADH1 are present. In contrast there are few completely analyzed ADH genomes in the non-primate group of mammals, where an additional class has been identified, ADH6, that has been lost during the evolution of primates. In this study 85 mammalian genomes with at least one ADH gene have been compiled. In total more than 500 ADH amino acid sequences were analyzed for patterns that distinguish the different classes. For ADH1-ADH4 intensive investigations have been performed both at the functional and at structural levels. However, a corresponding functional protein to the ADH5 gene, which is found in most ADH genomes, has never been detected. The same is true for ADH6, which is only present in non-primates. The entire mammalian ADH family shows a broad spectrum of gene duplications and gene losses where the numbers differ from six genes (most non-primate mammals) up to ten genes (vole). Included in these sets are examples of pseudogenes and pseudoenzymes.

摘要

哺乳动物乙醇脱氢酶(ADH)是一个蛋白质家族,分为六个类别,已知家族成员的数量正在迅速增加。对几个灵长类动物的基因组进行了ADH区域的全面分析,高等灵长类动物(人类和类人猿)在该区域有ADH1 - ADH5这七个基因。在非类人猿猿类群体中存在进一步的基因复制,并且出现了具有超过ADH1典型三种同工酶形式的物种。相比之下,在非灵长类哺乳动物群体中,经过全面分析的ADH基因组很少,在该群体中已鉴定出一个额外的类别ADH6,它在灵长类动物的进化过程中丢失了。在本研究中,汇编了85个至少含有一个ADH基因的哺乳动物基因组。总共分析了500多个ADH氨基酸序列,以寻找区分不同类别的模式。对于ADH1 - ADH4,已经在功能和结构层面进行了深入研究。然而,在大多数ADH基因组中都能找到的ADH5基因对应的功能蛋白从未被检测到。ADH6也是如此,它仅存在于非灵长类动物中。整个哺乳动物ADH家族呈现出广泛的基因复制和基因丢失现象,其基因数量从六个基因(大多数非灵长类哺乳动物)到十个基因(田鼠)不等。这些集合中包括假基因和假酶的例子。

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