Liu Yin, Fang Yuda
a National Key Laboratory of Plant Molecular Genetics; Shanghai Institute of Plant Physiology and Ecology; Shanghai Institutes for Biological Sciences; Chinese Academy of Sciences; Shanghai, China.
Nucleus. 2014 Jul-Aug;5(4):293-7. doi: 10.4161/nucl.29837.
Multiple biological processes are regulated by complicated interaction networks formed by protein-protein or protein-RNA interactions. Nuclear bodies (NBs) are a class of membrane-less subnuclear structures, acting as reaction sites, storage and modification sites, or transcription regulating sites involved in signaling transduction. Biochemical and fluorescence-based methods are widely used to study protein-protein interactions, but false-positive results are a major issue, especially for some fluorescence-based methods. Moreover, these methods fail to be applied to study the formation of NBs, which were characterized by a popular bacterial Lac operator and/or repressor (LacO/LacI) system in mammalian cells. Methods investigating assembly of plant NBs are not available. We have recently developed a nucleolar marker protein nucleolin2 (Nuc2)-based method named Nucleolus-tethering System (NoTS) and showed its application in interaction assay among nucleoplasmic proteins and initiation of plant specific NBs, photobodies. In this extraview, we will compare NoTS with the traditional methods and discuss the assembly mechanisms of NBs, in addition to advantages, limitations, and perspectives about the application of NoTS.
多种生物学过程受蛋白质-蛋白质或蛋白质-RNA相互作用形成的复杂相互作用网络调控。核体(NBs)是一类无膜亚核结构,作为反应位点、储存和修饰位点或参与信号转导的转录调控位点。基于生化和荧光的方法被广泛用于研究蛋白质-蛋白质相互作用,但假阳性结果是一个主要问题,尤其是对于一些基于荧光的方法。此外,这些方法无法用于研究核体的形成,核体的形成在哺乳动物细胞中以一种流行的细菌乳糖操纵子和/或阻遏物(LacO/LacI)系统为特征。目前尚无研究植物核体组装的方法。我们最近开发了一种基于核仁标记蛋白核仁素2(Nuc2)的方法,称为核仁拴系系统(NoTS),并展示了其在核质蛋白相互作用测定以及植物特异性核体——光体形成起始中的应用。在这篇扩展观点文章中,我们将把NoTS与传统方法进行比较,并讨论核体的组装机制,以及NoTS应用的优点、局限性和前景。