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不同的重编程途径导致不同的干细胞状态。

Divergent reprogramming routes lead to alternative stem-cell states.

机构信息

Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada.

1] Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada [2] Institute of Medical Science, University of Toronto, Toronto, Ontario M5T 3H7, Canada.

出版信息

Nature. 2014 Dec 11;516(7530):192-7. doi: 10.1038/nature14047.

DOI:10.1038/nature14047
PMID:25503232
Abstract

Pluripotency is defined by the ability of a cell to differentiate to the derivatives of all the three embryonic germ layers: ectoderm, mesoderm and endoderm. Pluripotent cells can be captured via the archetypal derivation of embryonic stem cells or via somatic cell reprogramming. Somatic cells are induced to acquire a pluripotent stem cell (iPSC) state through the forced expression of key transcription factors, and in the mouse these cells can fulfil the strictest of all developmental assays for pluripotent cells by generating completely iPSC-derived embryos and mice. However, it is not known whether there are additional classes of pluripotent cells, or what the spectrum of reprogrammed phenotypes encompasses. Here we explore alternative outcomes of somatic reprogramming by fully characterizing reprogrammed cells independent of preconceived definitions of iPSC states. We demonstrate that by maintaining elevated reprogramming factor expression levels, mouse embryonic fibroblasts go through unique epigenetic modifications to arrive at a stable, Nanog-positive, alternative pluripotent state. In doing so, we prove that the pluripotent spectrum can encompass multiple, unique cell states.

摘要

多能性是指细胞分化为三个胚胎胚层(外胚层、中胚层和内胚层)衍生物的能力。多能细胞可以通过胚胎干细胞的典型分化或体细胞重编程获得。通过强制表达关键转录因子,体细胞被诱导获得多能干细胞(iPSC)状态,并且在小鼠中,这些细胞可以通过生成完全由 iPSC 衍生的胚胎和小鼠来满足多能细胞最严格的所有发育测定。然而,目前尚不清楚是否存在其他类别的多能细胞,或者重编程表型的范围包括哪些。在这里,我们通过完全表征独立于 iPSC 状态的预先定义的重编程细胞,探索体细胞重编程的替代结果。我们证明,通过维持升高的重编程因子表达水平,小鼠胚胎成纤维细胞经历独特的表观遗传修饰,从而达到稳定的、Nanog 阳性的、替代性多能状态。这样,我们证明了多潜能谱可以包含多个独特的细胞状态。

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Divergent reprogramming routes lead to alternative stem-cell states.不同的重编程途径导致不同的干细胞状态。
Nature. 2014 Dec 11;516(7530):192-7. doi: 10.1038/nature14047.
2
Genome-wide characterization of the routes to pluripotency.多能性形成途径的全基因组特征分析。
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本文引用的文献

1
Genome-wide characterization of the routes to pluripotency.多能性形成途径的全基因组特征分析。
Nature. 2014 Dec 11;516(7530):198-206. doi: 10.1038/nature14046.
2
Proteome adaptation in cell reprogramming proceeds via distinct transcriptional networks.细胞重编程过程中的蛋白质组适应性通过不同的转录网络进行。
Nat Commun. 2014 Dec 10;5:5613. doi: 10.1038/ncomms6613.
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Small RNA changes en route to distinct cellular states of induced pluripotency.小RNA在诱导多能性的不同细胞状态转变过程中的变化
从头识别通用细胞力学基因特征。
Elife. 2025 Feb 17;12:RP87930. doi: 10.7554/eLife.87930.
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Stemformatics data portal enables transcriptional benchmarking of lab-derived myeloid cells.基于干细胞信息学的数据门户实现了实验室来源的髓样细胞的转录基准测试。
Stem Cell Reports. 2024 Jun 11;19(6):922-932. doi: 10.1016/j.stemcr.2024.04.012. Epub 2024 May 23.
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Partial cellular reprogramming: A deep dive into an emerging rejuvenation technology.部分细胞重编程:新兴的抗衰老技术深度剖析。
Aging Cell. 2024 Feb;23(2):e14039. doi: 10.1111/acel.14039. Epub 2023 Dec 1.
6
Synthetic genetic circuits to uncover the OCT4 trajectories of successful reprogramming of human fibroblasts.合成遗传电路揭示人成纤维细胞成功重编程的 OCT4 轨迹。
Sci Adv. 2023 Dec;9(48):eadg8495. doi: 10.1126/sciadv.adg8495. Epub 2023 Nov 29.
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An engineered Sox17 induces somatic to neural stem cell fate transitions independently from pluripotency reprogramming.一个工程化的 Sox17 可独立于多能性重编程诱导体干细胞向神经干细胞命运转变。
Sci Adv. 2023 Aug 25;9(34):eadh2501. doi: 10.1126/sciadv.adh2501. Epub 2023 Aug 23.
8
Cell-type dependent regulation of pluripotency and chromatin remodeling genes by hydralazine.肼屈嗪对多能性和染色质重塑基因的细胞类型依赖性调节。
Stem Cell Res Ther. 2023 Mar 16;14(1):42. doi: 10.1186/s13287-023-03268-w.
9
Dental-derived cells for regenerative medicine: stem cells, cell reprogramming, and transdifferentiation.用于再生医学的牙源细胞:干细胞、细胞重编程和转分化
J Periodontal Implant Sci. 2022 Dec;52(6):437-454. doi: 10.5051/jpis.2103760188. Epub 2022 May 18.
10
Highly efficient reprogrammable mouse lines with integrated reporters to track the route to pluripotency.高效可重编程的小鼠系,带有整合报告基因,用于追踪多能性的获得途径。
Proc Natl Acad Sci U S A. 2022 Dec 6;119(49):e2207824119. doi: 10.1073/pnas.2207824119. Epub 2022 Dec 1.
Nat Commun. 2014 Dec 10;5:5522. doi: 10.1038/ncomms6522.
4
An epigenomic roadmap to induced pluripotency reveals DNA methylation as a reprogramming modulator.诱导多能性的表观基因组路线图揭示DNA甲基化作为一种重编程调节因子。
Nat Commun. 2014 Dec 10;5:5619. doi: 10.1038/ncomms6619.
5
Tet and TDG mediate DNA demethylation essential for mesenchymal-to-epithelial transition in somatic cell reprogramming.Tet 和 TDG 介导 DNA 去甲基化,对于体细胞重编程中的间质到上皮转化是必需的。
Cell Stem Cell. 2014 Apr 3;14(4):512-22. doi: 10.1016/j.stem.2014.01.001. Epub 2014 Feb 13.
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Cell. 2012 Dec 21;151(7):1617-32. doi: 10.1016/j.cell.2012.11.039.
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A late transition in somatic cell reprogramming requires regulators distinct from the pluripotency network.体细胞重编程的晚期转变需要不同于多能性网络的调控因子。
Cell Stem Cell. 2012 Dec 7;11(6):769-82. doi: 10.1016/j.stem.2012.11.008.
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10
The histone demethylases Jhdm1a/1b enhance somatic cell reprogramming in a vitamin-C-dependent manner.组蛋白去甲基酶 Jhdm1a/1b 以依赖维生素 C 的方式增强体细胞核重编程。
Cell Stem Cell. 2011 Dec 2;9(6):575-87. doi: 10.1016/j.stem.2011.10.005. Epub 2011 Nov 17.